Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0399 ATGGCGCCGGGTTTTTCTAACCTAGATTACGATCTAGATCATCATCATCATCAACAACAACAGCAGCAGCAAGAATTGATCATGAAGTCGACTTCTGGTGATAACAACGGTAATAACGGAATGGTTTACTACTTGTTCGACAATCCTCAAGAGCAACAGCAGCAGCCACAACATGAGCATCAACATATCATGTCCTCTTCTTCCGGCTTTTGTGGGCCGGCTTCTCATCATCTAGATAAACTAAGCTTTGCCGACGTGATGCAGTTTGCAGATTTTGGGCCCAAATTGGGTTTGAATCAATCTAAGATGTCCGAAGATGATTCTGGTGGAATCGACCCTGTTTATTTCCTCAAGTTTCCCGTCTTGAACGAAAGGGCCGAAGATCATAATCATCATCATCATAATAATCAGGAGATCATGGAAAATCATACGGCTCTTATGGTTCCACAAGGAGCTCATATTCATCACGGTCATGATCAAGAGCATCATCGGGAAGGGTTTCAAAGAGATCAAAATCATCATCACGATGATCATGATGAAGCTCGGTTTTCGGACCACTCATCCGTTCAGCTTAGGTATGTGGGAGATCAAGATCACGATCATGCGCAGAACACGATCGAGAACAATACTAATCCCTTTACGGATCAAACTACAAAGAACAAGAGGAAGAGAGCAAGGACAATTAAGACTAGCGAAGAAGTTGAAAGCCAAAGAATGACTCATATTGCTGTTGAGAGGAATAGAAGAAAGCAAATGAATGAGCATCTCCGCGTCTTGAGGTCCCTCATGCCGGGTTCTTACGTTCAAAGAGGCGATCAGGCTTCGATAATAGGTGGTGCAATTGAATTTGTAAGAGAATTGGAGCAACTTCTACAATGCTTAGAATCACAGAAGCGTAGGAGGCTCCTTGGACCGGATCAGTCCTCAAGGCAAGCAGGAGATTCATCCAACATGGCAATTCAACCGCTACCACCACCTCAACCACCGTTTATGCCGCTTCCGGAAGATCAGGTGATAAGGCCGATCAGTATGGAATTCGAAACCTGCTTGTCCGGTGGGGCCGGGATAAGAGAAGAAACAGCCGAGAATAAGTCATGCTTGGCGGATGTCGAAGTGAAGCTTCTAGGGTTTGATGCAATGATCAAAGTTCTTTCCAGAAGAAGAGCAGGGCAGCTTGTGAAAACTATCGCTGCCCTAGAGGATCTGCAGCTTAACATCCTTCATACTAACATCACCACCATTGAACAAACAGTACTTTATTCATTTAACGTCAAGGTCGGGAGTGAATCAAGATTTACGGCGGAAGATATAGCGACTTCAATTCAACAGATTTTCAGTTTTATCCATACAAATAGCAGCTAG 1362 44.05 MAPGFSNLDYDLDHHHHQQQQQQQELIMKSTSGDNNGNNGMVYYLFDNPQEQQQQPQHEHQHIMSSSSGFCGPASHHLDKLSFADVMQFADFGPKLGLNQSKMSEDDSGGIDPVYFLKFPVLNERAEDHNHHHHNNQEIMENHTALMVPQGAHIHHGHDQEHHREGFQRDQNHHHDDHDEARFSDHSSVQLRYVGDQDHDHAQNTIENNTNPFTDQTTKNKRKRARTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGPDQSSRQAGDSSNMAIQPLPPPQPPFMPLPEDQVIRPISMEFETCLSGGAGIREETAENKSCLADVEVKLLGFDAMIKVLSRRRAGQLVKTIAALEDLQLNILHTNITTIEQTVLYSFNVKVGSESRFTAEDIATSIQQIFSFIHTNSS 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1815296 1817434 + Conep04aG0041300.1 Cone4ag0399 435377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0399 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 287 IPR011598 GO:0046983(InterPro)
Cone4ag0399 453 SMART finulus 242 293 IPR011598 GO:0046983(InterPro)
Cone4ag0399 453 MobiDBLite consensus disorder prediction 156 186 - -
Cone4ag0399 453 Pfam Helix-loop-helix DNA-binding domain 237 288 IPR011598 GO:0046983(InterPro)
Cone4ag0399 453 FunFam Basic helix-loop-helix transcription factor 227 302 - -
Cone4ag0399 453 MobiDBLite consensus disorder prediction 202 225 - -
Cone4ag0399 453 CDD bHLH_AtFAMA_like 239 304 - -
Cone4ag0399 453 PANTHER TRANSCRIPTION FACTOR FAMA 146 447 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone4ag0399 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 307 IPR036638 GO:0046983(InterPro)
Cone4ag0399 453 MobiDBLite consensus disorder prediction 301 329 - -
Cone4ag0399 453 MobiDBLite consensus disorder prediction 14 33 - -
Cone4ag0399 453 Gene3D - 234 304 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0031 Cone-Chr14:240995 Cone4ag0399 Cone-Chr4:1815296 2.38E-40 dispersed
Cone14ag0468 Cone-Chr14:2244215 Cone4ag0399 Cone-Chr4:1815296 5.21E-50 dispersed
Cone15ag0502 Cone-Chr15:2407532 Cone4ag0399 Cone-Chr4:1815296 9.72E-53 dispersed
Cone1ag0958 Cone-Chr1:54816641 Cone4ag0399 Cone-Chr4:1815296 1.11E-36 dispersed
Cone4ag0209 Cone-Chr4:963164 Cone4ag0399 Cone-Chr4:1815296 1.48E-38 dispersed
Cone4ag0399 Cone-Chr4:1815296 Cone5ag0020 Cone-Chr5:133301 5.75E-38 dispersed
Cone4ag0399 Cone-Chr4:1815296 Cone7ag0388 Cone-Chr7:1711919 1.35E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45919 PF00378 ECH_1 1.10E-19 CL0127 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0399 K26213 - rcu:8280676 461.07