Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0401 ATGTACTCAGCTATTCACTCGCTTCCGCTTGATGGGAGTAGTGTGGTTGGGCACAGCAACTTCCATGGATCTCTAGATGGAATTTCCACCTTACCCCGCGACGCTTGTCTGGTCCTCACTTCCGATCCCAAGCCCCGGCTTCGGTGGACGGCGGAGCTCCATGAGAGATTCGTCGACGCCGTCACCCAGCTCGGTGGCCCTGATAAAGCAACGCCTAAGACTATTATGAGAACCATGGGAGTAAAAGGTTTAACTCTTTATCACTTGAAATCACATCTCCAGAAATACAGGTTGGGGAAGCAATCATGCAAGGACTCAACCGAAAACTCAAAAGATGCTTCTTGCATTGCAGAAAGTCAAGAAACCAGCTCGTCTTCATCCCCATCATCTAGGATGATGGCACAAGATCTTAACGATGGTCACCAAGTCACGGAGGCTTTACGGTTACAAATGGAAGTCCAGAGAAGATTGCACGAACAACTTGAGGTCCAGCGTCGGCTCCAAGTTCGGATCGAAGCACAAGGCAAATACCTTCAATCAATACTTGAGAAAGCTTGTCAAGCTCTAAGCAATCAGGCTTTAGCATCAGCCGGGATCGAAGCAGCCCGAGAAGAGCTATCAGGCCTGGAAATCAAGGTTCCAAACGACTATCAAGGAATGGGCCTGGGACCGATTGAAGGTGTGAAAACTACCCCCCTATCGGAACTTGCTGTGGCTCTTGGAAACAGGAATAATGCTACTACGAATATACCCGCTAGGATTGGGGATTGCTTGGTGGATAGTTGCTTGACATCAAGCGGGAGTCCGGTTTCACATGTTGGTGAAGCGAAGAAGAGATCGAGGGGGCCCGTGTTTGGAAGTGGAGATACTATCCCCTCCTTGGAAAGCAATTTGCGGCAGGAAGTTGAACGGATGATGACTAATATTGGATGA 933 49.09 MYSAIHSLPLDGSSVVGHSNFHGSLDGISTLPRDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKDSTENSKDASCIAESQETSSSSSPSSRMMAQDLNDGHQVTEALRLQMEVQRRLHEQLEVQRRLQVRIEAQGKYLQSILEKACQALSNQALASAGIEAAREELSGLEIKVPNDYQGMGLGPIEGVKTTPLSELAVALGNRNNATTNIPARIGDCLVDSCLTSSGSPVSHVGEAKKRSRGPVFGSGDTIPSLESNLRQEVERMMTNIG 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1822889 1825071 + Conep04aG0041500.1 Cone4ag0401 435379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0401 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 277 IPR046955 GO:0003700(InterPro)
Cone4ag0401 310 MobiDBLite consensus disorder prediction 101 134 - -
Cone4ag0401 310 FunFam Myb family transcription factor 43 101 - -
Cone4ag0401 310 SUPERFAMILY Homeodomain-like 44 101 IPR009057 -
Cone4ag0401 310 MobiDBLite consensus disorder prediction 267 290 - -
Cone4ag0401 310 Pfam Myb-like DNA-binding domain 46 97 IPR001005 -
Cone4ag0401 310 MobiDBLite consensus disorder prediction 108 134 - -
Cone4ag0401 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677(InterPro)
Cone4ag0401 310 Gene3D - 43 101 - -
Cone4ag0401 310 Pfam MYB-CC type transfactor, LHEQLE motif 142 187 IPR025756 -
Cone4ag0401 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1448 Cone-Chr10:11222271 Cone4ag0401 Cone-Chr4:1822889 1.75E-47 dispersed
Cone3ag1514 Cone-Chr3:33669386 Cone4ag0401 Cone-Chr4:1822889 7.99E-48 dispersed
Cone4ag0401 Cone-Chr4:1822889 Cone8ag1607 Cone-Chr8:11908305 9.42E-53 dispersed
Cone12ag0518 Cone-Chr12:3547407 Cone4ag0401 Cone-Chr4:1822889 1.58E-43 transposed
Cone4ag0401 Cone-Chr4:1822889 Cone7ag0390 Cone-Chr7:1718930 1.08E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45920 PF05514 HR_lesion 5.60E-43 CL0131 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0401 - - - 0.0