Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0406 ATGGCGATGAGAGAAGCTACATCTTCATCAAACTATTATGTATACCCACAACCACTTGCAAAATATGAAGACATTGTGTCAAATCCTGAGCTTTTCATGGCTTCTCTTGAGAAGCTTCATGCTTCAATGGGAACCAAGTTCATGATACCGATTATAGGGGGCAAAGAGCTAGACTTGCATAAGCTTTTCGTGGAAGTTACTTTGCGTGGCGGAATCGGAAAGATTATCAGAGAGAGAAGATGGAAAGAAGTCACGGCCATTTTTAACTTCCCCTCAACGGCTACTAATGCATCTTTCGTGCTCCGAAAATACTATTCTTCATTACTTCACCACTATGAACAAATGTACTACTTCAAAGTTCAAGGATGGACCCCAACCTCGGCCTATTCTTTGCCAATTCCAAACTCGGAAATGAATCTGTCTCAGTGGAACCAACCATCTTGGCCCTTGCCCTTTGTTCAAGCTACTGATATGCAGCAGCAACCCACAGAATATCCAGCAGAAAGGCCGGCATCATTGGCAGGATGTCCGTTAACGGGGGTAATTGACGGTAAATTCGACAGCGGTTATCTCGTAACAGTCATCTTAGGCTCGGAGGAACTAAAGGGTGTTCTTTATGAAATGCCTTTTAACCCAACTCAACAAGTAACTACAACACAACAACCCTATGGTCTCTTATCCAACAACAAAGAAACTGTCTCAACAACTCCTCAAACTACCACTCGTCCTCCTCGCCGGCGCCGCCGGAAAAAGTATGAGATAAAACGGCGGGACCCAGCTCATCCAAAACCGAACAGAAGCGGTTATAATTTCTTCTTTGCCGAGCAACATGCCAGACTGAAACCACTACACCCTGGTAAAGATAGAGAGATTAGTAGAATGATTGGCGAGCTATGGAACAATCTAATCGACTTACAGAAAACGGTTTATCAAGAGAAAGCGGCTAAGGATAAAGAGAGATATAGGACCGAGATGGAATATTATAAGGAGAGGTTGAGGACAGGACAAGTTGTGAGTGATGCCGTGCCTATACAACAAATGATGCCATACACAGATTTGAACTTGGTTGAAGCTGATGTTAGGATGGAAGATGAGGCTAAGAGCTTGGATTCATCTATGCAAATGCCAGAGAATGAGAGCAGTACTAGTAAGAGTGTTTACGATGATGATGGTCTGACGGTTGAGAAGGATATGGTCAATGCTGATGTATTGGATGGATTGACATTAGGCTTAGGAGTGGGGCCTGAACCGAACAATGTGGATGTCTTTGTGCCGGTTAAGGATGCAGGAGGCAATGTCCGAGAGGAGAATAATGAGAAGATTGGTGAGGAGAGATTACAACAATGGCTTGGCGGTAATAATGCATCGGGAGCTGAGAAATGA 1383 43.96 MAMREATSSSNYYVYPQPLAKYEDIVSNPELFMASLEKLHASMGTKFMIPIIGGKELDLHKLFVEVTLRGGIGKIIRERRWKEVTAIFNFPSTATNASFVLRKYYSSLLHHYEQMYYFKVQGWTPTSAYSLPIPNSEMNLSQWNQPSWPLPFVQATDMQQQPTEYPAERPASLAGCPLTGVIDGKFDSGYLVTVILGSEELKGVLYEMPFNPTQQVTTTQQPYGLLSNNKETVSTTPQTTTRPPRRRRRKKYEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNNLIDLQKTVYQEKAAKDKERYRTEMEYYKERLRTGQVVSDAVPIQQMMPYTDLNLVEADVRMEDEAKSLDSSMQMPENESSTSKSVYDDDGLTVEKDMVNADVLDGLTLGLGVGPEPNNVDVFVPVKDAGGNVREENNEKIGEERLQQWLGGNNASGAEK 460
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1842806 1845379 + Conep04aG0042000.1 Cone4ag0406 435384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0406 460 FunFam High mobility group B protein 15 20 131 - -
Cone4ag0406 460 Pfam ARID/BRIGHT DNA binding domain 29 113 IPR001606 GO:0003677(InterPro)
Cone4ag0406 460 SUPERFAMILY ARID-like 24 127 IPR036431 GO:0003677(InterPro)
Cone4ag0406 460 Gene3D High mobility group box domain 245 340 IPR036910 -
Cone4ag0406 460 FunFam High mobility group B protein 15 244 339 - -
Cone4ag0406 460 Gene3D - 16 123 IPR036431 GO:0003677(InterPro)
Cone4ag0406 460 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 373 - -
Cone4ag0406 460 CDD HMG-box_AtHMGB9-like 262 328 - -
Cone4ag0406 460 SMART ARID_2 23 113 - -
Cone4ag0406 460 SMART hmgende2 261 330 IPR009071 -
Cone4ag0406 460 SUPERFAMILY HMG-box 259 331 IPR036910 -
Cone4ag0406 460 SMART bright_3 27 118 IPR001606 GO:0003677(InterPro)
Cone4ag0406 460 MobiDBLite consensus disorder prediction 242 256 - -
Cone4ag0406 460 MobiDBLite consensus disorder prediction 371 388 - -
Cone4ag0406 460 Pfam HMG (high mobility group) box 262 329 IPR009071 -
Cone4ag0406 460 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 262 329 IPR009071 -
Cone4ag0406 460 CDD ARID_HMGB9-like 28 113 IPR045303 GO:0003677(InterPro)
Cone4ag0406 460 MobiDBLite consensus disorder prediction 434 460 - -
Cone4ag0406 460 MobiDBLite consensus disorder prediction 227 241 - -
Cone4ag0406 460 ProSiteProfiles ARID domain profile. 26 117 IPR001606 GO:0003677(InterPro)
Cone4ag0406 460 MobiDBLite consensus disorder prediction 365 388 - -
Cone4ag0406 460 MobiDBLite consensus disorder prediction 227 268 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1432 Cone-Chr17:9780674 Cone4ag0406 Cone-Chr4:1842806 1.19E-67 dispersed
Cone20ag0052 Cone-Chr20:254125 Cone4ag0406 Cone-Chr4:1842806 1.31E-70 dispersed
Cone4ag0406 Cone-Chr4:1842806 Cone4ag1987 Cone-Chr4:13923663 1.72E-79 dispersed
Cone4ag0406 Cone-Chr4:1842806 Cone7ag0393 Cone-Chr7:1752040 3.62E-261 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45921 PF01012 ETF 4.50E-44 CL0039 Cone TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0406 - - - 0.0