Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0406 ATGGCGATGAGAGAAGCTACATCTTCATCAAACTATTATGTATACCCACAACCACTTGCAAAATATGAAGACATTGTGTCAAATCCTGAGCTTTTCATGGCTTCTCTTGAGAAGCTTCATGCTTCAATGGGAACCAAGTTCATGATACCGATTATAGGGGGCAAAGAGCTAGACTTGCATAAGCTTTTCGTGGAAGTTACTTTGCGTGGCGGAATCGGAAAGATTATCAGAGAGAGAAGATGGAAAGAAGTCACGGCCATTTTTAACTTCCCCTCAACGGCTACTAATGCATCTTTCGTGCTCCGAAAATACTATTCTTCATTACTTCACCACTATGAACAAATGTACTACTTCAAAGTTCAAGGATGGACCCCAACCTCGGCCTATTCTTTGCCAATTCCAAACTCGGAAATGAATCTGTCTCAGTGGAACCAACCATCTTGGCCCTTGCCCTTTGTTCAAGCTACTGATATGCAGCAGCAACCCACAGAATATCCAGCAGAAAGGCCGGCATCATTGGCAGGATGTCCGTTAACGGGGGTAATTGACGGTAAATTCGACAGCGGTTATCTCGTAACAGTCATCTTAGGCTCGGAGGAACTAAAGGGTGTTCTTTATGAAATGCCTTTTAACCCAACTCAACAAGTAACTACAACACAACAACCCTATGGTCTCTTATCCAACAACAAAGAAACTGTCTCAACAACTCCTCAAACTACCACTCGTCCTCCTCGCCGGCGCCGCCGGAAAAAGTATGAGATAAAACGGCGGGACCCAGCTCATCCAAAACCGAACAGAAGCGGTTATAATTTCTTCTTTGCCGAGCAACATGCCAGACTGAAACCACTACACCCTGGTAAAGATAGAGAGATTAGTAGAATGATTGGCGAGCTATGGAACAATCTAATCGACTTACAGAAAACGGTTTATCAAGAGAAAGCGGCTAAGGATAAAGAGAGATATAGGACCGAGATGGAATATTATAAGGAGAGGTTGAGGACAGGACAAGTTGTGAGTGATGCCGTGCCTATACAACAAATGATGCCATACACAGATTTGAACTTGGTTGAAGCTGATGTTAGGATGGAAGATGAGGCTAAGAGCTTGGATTCATCTATGCAAATGCCAGAGAATGAGAGCAGTACTAGTAAGAGTGTTTACGATGATGATGGTCTGACGGTTGAGAAGGATATGGTCAATGCTGATGTATTGGATGGATTGACATTAGGCTTAGGAGTGGGGCCTGAACCGAACAATGTGGATGTCTTTGTGCCGGTTAAGGATGCAGGAGGCAATGTCCGAGAGGAGAATAATGAGAAGATTGGTGAGGAGAGATTACAACAATGGCTTGGCGGTAATAATGCATCGGGAGCTGAGAAATGA 1383 43.96 MAMREATSSSNYYVYPQPLAKYEDIVSNPELFMASLEKLHASMGTKFMIPIIGGKELDLHKLFVEVTLRGGIGKIIRERRWKEVTAIFNFPSTATNASFVLRKYYSSLLHHYEQMYYFKVQGWTPTSAYSLPIPNSEMNLSQWNQPSWPLPFVQATDMQQQPTEYPAERPASLAGCPLTGVIDGKFDSGYLVTVILGSEELKGVLYEMPFNPTQQVTTTQQPYGLLSNNKETVSTTPQTTTRPPRRRRRKKYEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNNLIDLQKTVYQEKAAKDKERYRTEMEYYKERLRTGQVVSDAVPIQQMMPYTDLNLVEADVRMEDEAKSLDSSMQMPENESSTSKSVYDDDGLTVEKDMVNADVLDGLTLGLGVGPEPNNVDVFVPVKDAGGNVREENNEKIGEERLQQWLGGNNASGAEK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1842806 1845379 + Conep04aG0042000.1 Cone4ag0406 435384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0406 460 FunFam High mobility group B protein 15 20 131 - -
Cone4ag0406 460 Pfam ARID/BRIGHT DNA binding domain 29 113 IPR001606 GO:0003677(InterPro)
Cone4ag0406 460 SUPERFAMILY ARID-like 24 127 IPR036431 GO:0003677(InterPro)
Cone4ag0406 460 Gene3D High mobility group box domain 245 340 IPR036910 -
Cone4ag0406 460 FunFam High mobility group B protein 15 244 339 - -
Cone4ag0406 460 Gene3D - 16 123 IPR036431 GO:0003677(InterPro)
Cone4ag0406 460 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 373 - -
Cone4ag0406 460 CDD HMG-box_AtHMGB9-like 262 328 - -
Cone4ag0406 460 SMART ARID_2 23 113 - -
Cone4ag0406 460 SMART hmgende2 261 330 IPR009071 -
Cone4ag0406 460 SUPERFAMILY HMG-box 259 331 IPR036910 -
Cone4ag0406 460 SMART bright_3 27 118 IPR001606 GO:0003677(InterPro)
Cone4ag0406 460 MobiDBLite consensus disorder prediction 242 256 - -
Cone4ag0406 460 MobiDBLite consensus disorder prediction 371 388 - -
Cone4ag0406 460 Pfam HMG (high mobility group) box 262 329 IPR009071 -
Cone4ag0406 460 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 262 329 IPR009071 -
Cone4ag0406 460 CDD ARID_HMGB9-like 28 113 IPR045303 GO:0003677(InterPro)
Cone4ag0406 460 MobiDBLite consensus disorder prediction 434 460 - -
Cone4ag0406 460 MobiDBLite consensus disorder prediction 227 241 - -
Cone4ag0406 460 ProSiteProfiles ARID domain profile. 26 117 IPR001606 GO:0003677(InterPro)
Cone4ag0406 460 MobiDBLite consensus disorder prediction 365 388 - -
Cone4ag0406 460 MobiDBLite consensus disorder prediction 227 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0406 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1432 Cone-Chr17:9780674 Cone4ag0406 Cone-Chr4:1842806 1.19E-67 dispersed
Cone20ag0052 Cone-Chr20:254125 Cone4ag0406 Cone-Chr4:1842806 1.31E-70 dispersed
Cone4ag0406 Cone-Chr4:1842806 Cone4ag1987 Cone-Chr4:13923663 1.72E-79 dispersed
Cone4ag0406 Cone-Chr4:1842806 Cone7ag0393 Cone-Chr7:1752040 3.62E-261 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0393 . 25 367 ARID Transcription Factor Family AT1G04880 58.8 5.4e-101 365.5
Cone4ag0406 . 18 364 ARID Transcription Factor Family AT1G04880 57.7 1.9e-98 357.1
Cone8ag0922 . 194 481 ARID Transcription Factor Family AT1G20910 58.0 5.4e-89 325.5
Cone12ag0889 . 189 476 ARID Transcription Factor Family AT1G20910 57.0 8.6e-87 318.2
Cone4ag1987 . 2 312 ARID Transcription Factor Family AT1G76110 64.2 1.4e-109 393.7
Cone7ag1916 . 22 306 ARID Transcription Factor Family AT1G76110 66.1 1.5e-108 390.2
Cone17ag1432 . 1 293 ARID Transcription Factor Family AT1G76110 62.7 7.4e-103 371.3
Cone20ag0052 . 5 293 ARID Transcription Factor Family AT1G76110 63.6 9.6e-103 370.9
Cone8ag0922 . 212 511 ARID Transcription Factor Family AT1G76510 63.5 8.3e-107 384.8
Cone12ag0889 . 207 506 ARID Transcription Factor Family AT1G76510 64.3 8.3e-107 384.8
Cone4ag0844 . 2 780 ARID Transcription Factor Family AT3G43240 62.4 1.5e-281 966.1
Cone7ag0835 . 2 780 ARID Transcription Factor Family AT3G43240 62.7 1.7e-280 962.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45921 PF01012 ETF 4.50E-44 CL0039 Cone TR