Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0406 | ATGGCGATGAGAGAAGCTACATCTTCATCAAACTATTATGTATACCCACAACCACTTGCAAAATATGAAGACATTGTGTCAAATCCTGAGCTTTTCATGGCTTCTCTTGAGAAGCTTCATGCTTCAATGGGAACCAAGTTCATGATACCGATTATAGGGGGCAAAGAGCTAGACTTGCATAAGCTTTTCGTGGAAGTTACTTTGCGTGGCGGAATCGGAAAGATTATCAGAGAGAGAAGATGGAAAGAAGTCACGGCCATTTTTAACTTCCCCTCAACGGCTACTAATGCATCTTTCGTGCTCCGAAAATACTATTCTTCATTACTTCACCACTATGAACAAATGTACTACTTCAAAGTTCAAGGATGGACCCCAACCTCGGCCTATTCTTTGCCAATTCCAAACTCGGAAATGAATCTGTCTCAGTGGAACCAACCATCTTGGCCCTTGCCCTTTGTTCAAGCTACTGATATGCAGCAGCAACCCACAGAATATCCAGCAGAAAGGCCGGCATCATTGGCAGGATGTCCGTTAACGGGGGTAATTGACGGTAAATTCGACAGCGGTTATCTCGTAACAGTCATCTTAGGCTCGGAGGAACTAAAGGGTGTTCTTTATGAAATGCCTTTTAACCCAACTCAACAAGTAACTACAACACAACAACCCTATGGTCTCTTATCCAACAACAAAGAAACTGTCTCAACAACTCCTCAAACTACCACTCGTCCTCCTCGCCGGCGCCGCCGGAAAAAGTATGAGATAAAACGGCGGGACCCAGCTCATCCAAAACCGAACAGAAGCGGTTATAATTTCTTCTTTGCCGAGCAACATGCCAGACTGAAACCACTACACCCTGGTAAAGATAGAGAGATTAGTAGAATGATTGGCGAGCTATGGAACAATCTAATCGACTTACAGAAAACGGTTTATCAAGAGAAAGCGGCTAAGGATAAAGAGAGATATAGGACCGAGATGGAATATTATAAGGAGAGGTTGAGGACAGGACAAGTTGTGAGTGATGCCGTGCCTATACAACAAATGATGCCATACACAGATTTGAACTTGGTTGAAGCTGATGTTAGGATGGAAGATGAGGCTAAGAGCTTGGATTCATCTATGCAAATGCCAGAGAATGAGAGCAGTACTAGTAAGAGTGTTTACGATGATGATGGTCTGACGGTTGAGAAGGATATGGTCAATGCTGATGTATTGGATGGATTGACATTAGGCTTAGGAGTGGGGCCTGAACCGAACAATGTGGATGTCTTTGTGCCGGTTAAGGATGCAGGAGGCAATGTCCGAGAGGAGAATAATGAGAAGATTGGTGAGGAGAGATTACAACAATGGCTTGGCGGTAATAATGCATCGGGAGCTGAGAAATGA | 1383 | 43.96 | MAMREATSSSNYYVYPQPLAKYEDIVSNPELFMASLEKLHASMGTKFMIPIIGGKELDLHKLFVEVTLRGGIGKIIRERRWKEVTAIFNFPSTATNASFVLRKYYSSLLHHYEQMYYFKVQGWTPTSAYSLPIPNSEMNLSQWNQPSWPLPFVQATDMQQQPTEYPAERPASLAGCPLTGVIDGKFDSGYLVTVILGSEELKGVLYEMPFNPTQQVTTTQQPYGLLSNNKETVSTTPQTTTRPPRRRRRKKYEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNNLIDLQKTVYQEKAAKDKERYRTEMEYYKERLRTGQVVSDAVPIQQMMPYTDLNLVEADVRMEDEAKSLDSSMQMPENESSTSKSVYDDDGLTVEKDMVNADVLDGLTLGLGVGPEPNNVDVFVPVKDAGGNVREENNEKIGEERLQQWLGGNNASGAEK | 460 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1842806 | 1845379 | + | Conep04aG0042000.1 | Cone4ag0406 | 435384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0406 | 460 | FunFam | High mobility group B protein 15 | 20 | 131 | - | - | |
Cone4ag0406 | 460 | Pfam | ARID/BRIGHT DNA binding domain | 29 | 113 | IPR001606 | GO:0003677(InterPro) | |
Cone4ag0406 | 460 | SUPERFAMILY | ARID-like | 24 | 127 | IPR036431 | GO:0003677(InterPro) | |
Cone4ag0406 | 460 | Gene3D | High mobility group box domain | 245 | 340 | IPR036910 | - | |
Cone4ag0406 | 460 | FunFam | High mobility group B protein 15 | 244 | 339 | - | - | |
Cone4ag0406 | 460 | Gene3D | - | 16 | 123 | IPR036431 | GO:0003677(InterPro) | |
Cone4ag0406 | 460 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 6 | 373 | - | - | |
Cone4ag0406 | 460 | CDD | HMG-box_AtHMGB9-like | 262 | 328 | - | - | |
Cone4ag0406 | 460 | SMART | ARID_2 | 23 | 113 | - | - | |
Cone4ag0406 | 460 | SMART | hmgende2 | 261 | 330 | IPR009071 | - | |
Cone4ag0406 | 460 | SUPERFAMILY | HMG-box | 259 | 331 | IPR036910 | - | |
Cone4ag0406 | 460 | SMART | bright_3 | 27 | 118 | IPR001606 | GO:0003677(InterPro) | |
Cone4ag0406 | 460 | MobiDBLite | consensus disorder prediction | 242 | 256 | - | - | |
Cone4ag0406 | 460 | MobiDBLite | consensus disorder prediction | 371 | 388 | - | - | |
Cone4ag0406 | 460 | Pfam | HMG (high mobility group) box | 262 | 329 | IPR009071 | - | |
Cone4ag0406 | 460 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 262 | 329 | IPR009071 | - | |
Cone4ag0406 | 460 | CDD | ARID_HMGB9-like | 28 | 113 | IPR045303 | GO:0003677(InterPro) | |
Cone4ag0406 | 460 | MobiDBLite | consensus disorder prediction | 434 | 460 | - | - | |
Cone4ag0406 | 460 | MobiDBLite | consensus disorder prediction | 227 | 241 | - | - | |
Cone4ag0406 | 460 | ProSiteProfiles | ARID domain profile. | 26 | 117 | IPR001606 | GO:0003677(InterPro) | |
Cone4ag0406 | 460 | MobiDBLite | consensus disorder prediction | 365 | 388 | - | - | |
Cone4ag0406 | 460 | MobiDBLite | consensus disorder prediction | 227 | 268 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1432 | Cone-Chr17:9780674 | Cone4ag0406 | Cone-Chr4:1842806 | 1.19E-67 | dispersed | |
Cone20ag0052 | Cone-Chr20:254125 | Cone4ag0406 | Cone-Chr4:1842806 | 1.31E-70 | dispersed | |
Cone4ag0406 | Cone-Chr4:1842806 | Cone4ag1987 | Cone-Chr4:13923663 | 1.72E-79 | dispersed | |
Cone4ag0406 | Cone-Chr4:1842806 | Cone7ag0393 | Cone-Chr7:1752040 | 3.62E-261 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45921 | PF01012 | ETF | 4.50E-44 | CL0039 | Cone | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0406 | - | - | - | 0.0 |