Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0408 ATGCAAGATAAGAATCGCGCGGCTCATACATCATTAACATCATCTGCATCAATGTTGAATCCCGGAAAGCTATTCCGAGGAGTGAGGCAAAGGCAATGGGGCAAATGGGTAGCAGAAATAAGGTTGCCTAGAAACCGAACAAGGGTGTGGTTAGGTACTTTTGATACAGGCGAAGAGGCTGCCATTGCATATGACACGGCTGCGTACATCTTACGTGGGGAATATGCACATTTGAATTTTCCAGATCAAAAGCATCGGATTAAAGATAATGATTCTTTGATTAAGAACACAGCTGATCTTCTGGAGGCTAAGTTGAAATCAATCTCACAAGGTACTACTAGTACTCGTACTAGTGGTAGTACTACTACATGTGCTTATAAGAAGAAGGCTACTGACAACTCGAGTTCGAGAGGAGACGGGACCGGATTTGAGAGTATGGAGAAGAAGAAGAAGATGAGTCAAGAGGTATTGTTAGATGTTGTTGATGGTGTTCAGTTAAGTAGAATGCCTTCTATGGATATGGATATGATTTGGGATGCTCTTTTAGTCCCCGATTCATGA 561 42.25 MQDKNRAAHTSLTSSASMLNPGKLFRGVRQRQWGKWVAEIRLPRNRTRVWLGTFDTGEEAAIAYDTAAYILRGEYAHLNFPDQKHRIKDNDSLIKNTADLLEAKLKSISQGTTSTRTSGSTTTCAYKKKATDNSSSRGDGTGFESMEKKKKMSQEVLLDVVDGVQLSRMPSMDMDMIWDALLVPDS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1847318 1847878 - Conep04aG0042200.1 Cone4ag0408 435386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0408 186 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677(InterPro)
Cone4ag0408 186 MobiDBLite consensus disorder prediction 128 148 - -
Cone4ag0408 186 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0408 186 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0408 186 CDD AP2 23 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0408 186 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0408 186 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0408 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 17 181 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone4ag0408 186 Pfam AP2 domain 25 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0408 186 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Cone4ag0408 186 SMART rav1_2 24 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0408 Cone-Chr4:1847318 Cone4ag1350 Cone-Chr4:11006044 8.13E-33 dispersed
Cone14ag0228 Cone-Chr14:1064666 Cone4ag0408 Cone-Chr4:1847318 1.46E-49 wgd
Cone15ag0246 Cone-Chr15:1160793 Cone4ag0408 Cone-Chr4:1847318 7.68E-46 wgd
Cone4ag0408 Cone-Chr4:1847318 Cone7ag0394 Cone-Chr7:1756379 1.50E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45922 PF00847 AP2 1.60E-15 CL0081 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0408 - - - 0.0