Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0410 ATGGCTGGCGTGTCGCTGAAGTGTGGGGACTGTGGATCTCTGCTTAGGTCTGTGGAGGAAGCTCAAGAACACGCTGAGCTCACTTCTCACTCCAACTTCTCCGAGTCAACCGAGGCAGTTCTCAATCTGGTCTGCACTACGTGTGGAAAGCCATGCCGATCCAAAACGGAGAGTGATTTACATACCAAAAGAACCGGCCACACTGATTTTACCGATAAGACATCAGAGGCAGCAAAGCCGATAAGCCTGGAGGTTCCAAAGGTTGCTGTAGACTCAGAAGACCCTGCTGATGTTGATCTTACTCAGCCTGAAGAAATGGTTGTCCCGGAGGTTGACAAAAAGCTTCTTGAAGAACTCGAGGCAATGGGTTTCTCAACAGCACAAGCAACTCGTGCCCTTCATTATTCTGGTAATGCAAGCCTTGAGGCTGCTGTAAATTGGGTAGTTGAACATGAAAGTGATCCCGACATGGATCAAATGCCTTTGGTGTCTTCCAGCACTAAGGTTGAGGCTCCAAAAGCTTCTCTTACACCAGAAGAATTGAAAGTCAAGCAACAAGAACTAAGGGAACGTGCTCGCAAGAAAAAAGAAGAGGAGGAAAGGAGAATGGAAAGAGAAAGGGAGAAGGAGAGAATTCGTGTGGGGAAGGAGCTCTTAGAAGCCAAGAGAATGGAAGAAGAAAATGAAAGGAAGAGAATAATTGCTTTGAGAAAAGCTGAAAAAGCGGAGGAGCAAAGAGCTAGGGAAAAAATTCGCCAAAAATTGGAAGAGGACAGAGCAGAAAGGAGGAGAAAGCTTGGACTACCACCAGAAGATCCTTCAACTGCAAAACCTTCTACACCAGTTGTAGAGGAGAAAAAGAGTACATTGCCAATAAGGCCAGCCACAAAGGCAGAGCAGATGAGAGAGTGTTTGCGATCTTTAAAGCAGACCCACAAGGATGATGATGCGAAAGTGAAGAGAGCATTCCAAACTCTTCTAACATATATAGGGAATGTTGTCAAAAATCCGGATGAGGAGAAGTTCAGAAAAATTCGACTCACAAACCTATCTTTCCAGGATAGGGTTGGTGTATTGAAAGGGGGCATTGAGTTTCTTGTGTTGTGTGGTTTTGAGAAAATAGAAGGAGGCGAATTCTTGTTTCTTCAAAGGGACAAGGTTGACAAGGCCGTACTCAACTCGGCGGGTGTTGAGCTGGACTCTGCAATAAAGAATCCTTTCTTTGGAGTCTTATAA 1236 45.23 MAGVSLKCGDCGSLLRSVEEAQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTESDLHTKRTGHTDFTDKTSEAAKPISLEVPKVAVDSEDPADVDLTQPEEMVVPEVDKKLLEELEAMGFSTAQATRALHYSGNASLEAAVNWVVEHESDPDMDQMPLVSSSTKVEAPKASLTPEELKVKQQELRERARKKKEEEERRMEREREKERIRVGKELLEAKRMEEENERKRIIALRKAEKAEEQRAREKIRQKLEEDRAERRRKLGLPPEDPSTAKPSTPVVEEKKSTLPIRPATKAEQMRECLRSLKQTHKDDDAKVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNLSFQDRVGVLKGGIEFLVLCGFEKIEGGEFLFLQRDKVDKAVLNSAGVELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1864068 1867361 + Conep04aG0042400.1 Cone4ag0410 435388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0410 411 Gene3D - 303 400 - -
Cone4ag0410 411 MobiDBLite consensus disorder prediction 239 289 - -
Cone4ag0410 411 SMART PGNneu 321 384 - -
Cone4ag0410 411 Gene3D - 112 157 - -
Cone4ag0410 411 MobiDBLite consensus disorder prediction 169 210 - -
Cone4ag0410 411 SUPERFAMILY PUG domain-like 294 407 IPR036339 -
Cone4ag0410 411 Coils Coil 181 213 - -
Cone4ag0410 411 Pfam PUB domain 318 389 IPR018997 -
Cone4ag0410 411 MobiDBLite consensus disorder prediction 175 210 - -
Cone4ag0410 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Cone4ag0410 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Cone4ag0410 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cone4ag0410 411 CDD PUB_UBA_plant 305 411 - -
Cone4ag0410 411 CDD UBA_PUB_plant 110 158 - -
Cone4ag0410 411 SUPERFAMILY UBA-like 105 164 IPR009060 GO:0005515(InterPro)
Cone4ag0410 411 SMART uba_6 112 150 IPR015940 -
Cone4ag0410 411 MobiDBLite consensus disorder prediction 239 270 - -
Cone4ag0410 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Cone4ag0410 411 Coils Coil 216 261 - -
Cone4ag0410 411 Pfam UBA-like domain 112 159 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0410 Cone-Chr4:1864068 Cone7ag0084 Cone-Chr7:370321 7.79E-91 dispersed
Cone4ag0410 Cone-Chr4:1864068 Cone7ag0399 Cone-Chr7:1775254 8.34E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0410 K24348 - csv:101215434 639.802