Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0439 ATGGAGCCTACTTTCTGTGAAATGTATGCCAACTTCTGTTACCATCTTGCTGGAGAGTTGCCTGATTTTAGTGATAATAATGAGAAAATTACTTTCAAGAGATTACTTCTGAACAAGTGCCAGGAAGAATTTGAGAGAGGTGAGAGAGAGCAGGAAGAAGCAAACAAAGTTGATGAAGAGAGTGAGACAAAACAAACTGAAGGGGAGCGAGAGGAGAAGAGAATTAAGGCACGGAGACGGATGTTGGGCAACATAAGATTGATTGGGGAGTTGTTCAAGAAAAAAATGTTGACAGAGAGAATAATGCATGAATGCATCAAGAAATTGTTGGGTCAATATCAAAATCCTGACGAGGAAGATATTGAAGCACTGTGCAAATTAATGAGCGCAATAGGGGAGATGATTGAGCACCCCAAAGCAAAGGAATTTATGGATGCATATTTCGAGATGATGGCAAAGTTATCAAACAACATGAAACTATCATCAAGGGTAAGGTTCATGCTGAAGGATTCGATCGAACTGCGAAAGAATAAATGGAAGCAGAGGAGAAAAGTTGAAGGACCGAAAAAGATCGAGGAAGTCCATAGAGATGCTGCTCAAGAACGACAAGCACAATATAGCAGGTTAGGCCGCGGTCCCGGAATGAATTCTTCTTCAAGAAGGGGCGGCCCACTAATGGAATTCGTTCCTAGGGGATCATCTATGTTATCTTCCCCCAATTCCCATATGGGAAGTGGTTTCCGTGGGTTTTCCAGCCAGGTACGTGGTTATGGAGGTCAAGATGCTCATCATGAAGAGAGACATTCTTACGAGGCTAGAACATTATCAGTTCCCCTGCCTAAAAAATCTACAGGTGATGACTCTAGTACTTTGGGCCCACAGGGTGGTCTAGGCAGAGGAATGTCCATTAGGGGACCCCTATCAGTTTCAGCTTCTTCTACATCACCTGATAATACCTCCTCTGGCCCTAATGATTCTCGAAGAATGGTGGGAGGTCTGAATGGTCATAGTTCTGTACCAGAGAGGGCTAGTTACAGCTCCAGGGGGGACCTTCGAAGAAACACGCCAGATAGATTTGCGGGCCCGGCATCAATTGACCAACCTAGTGCGCAAGTGAGAAATTCAGACTGCAATTCTGATCGACCTCTTTCAACCTCACCATCAACTCGAGGGCAGGGATCTCCTCTCACGGCAAATGTTTCCTCAGGAAAGCCATTGTCTGAAGATCGCCTCCAAGATATGTCCATGGCAGCAATCAAAGAATTTTACAGTGCTAGAGATGTGAAGGAAGTTGCTATGTGCATCAAAGACTTGAATTCCCCATTGTTCCATTCATCGATGATACATCTTTGGGTCACTGATTCCTTTGAAAGGAAAGATGTTGAGAGGGATCTTTTGGCGAAACTTCTGATCGACCTTACAAAGTCTAATGACGGCATATTGAGTGAAGCTCAACTCATCAAAGGGTTCGAATCCGCTCTTGCCGTGTTTGAAGATACCGTGAACGATGCCCCAAAAGCACCAGAATTCGTGGGCCGTTTGCTCGCTAAATTTGTGTTAGAAAATCTGGTTTCATTGAGAGAGATCGGGCAGTTAATTTATGAAGGCGGGGAGAAGCCGGGAGGTCTGCGCCAAGTGGGACTTGCAGCTGATGTTCTTGGTAACATATTGGAGGTAATAAGAACAGAGAAAGGTGATAGTATTTTAAATGAGCTTCGTACAAGTTCGACTTTGCGTTTGGAGACGTTTAGGCCTCCTGATCCTATCAAATCCAGGATTTTGGAGAAATTCCTTTAA 1797 44.24 MEPTFCEMYANFCYHLAGELPDFSDNNEKITFKRLLLNKCQEEFERGEREQEEANKVDEESETKQTEGEREEKRIKARRRMLGNIRLIGELFKKKMLTERIMHECIKKLLGQYQNPDEEDIEALCKLMSAIGEMIEHPKAKEFMDAYFEMMAKLSNNMKLSSRVRFMLKDSIELRKNKWKQRRKVEGPKKIEEVHRDAAQERQAQYSRLGRGPGMNSSSRRGGPLMEFVPRGSSMLSSPNSHMGSGFRGFSSQVRGYGGQDAHHEERHSYEARTLSVPLPKKSTGDDSSTLGPQGGLGRGMSIRGPLSVSASSTSPDNTSSGPNDSRRMVGGLNGHSSVPERASYSSRGDLRRNTPDRFAGPASIDQPSAQVRNSDCNSDRPLSTSPSTRGQGSPLTANVSSGKPLSEDRLQDMSMAAIKEFYSARDVKEVAMCIKDLNSPLFHSSMIHLWVTDSFERKDVERDLLAKLLIDLTKSNDGILSEAQLIKGFESALAVFEDTVNDAPKAPEFVGRLLAKFVLENLVSLREIGQLIYEGGEKPGGLRQVGLAADVLGNILEVIRTEKGDSILNELRTSSTLRLETFRPPDPIKSRILEKFL 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1963385 1970082 - Conep04aG0045300.1 Cone4ag0439 435417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0439 598 FunFam Eukaryotic translation initiation factor 4G 1 191 - -
Cone4ag0439 598 Gene3D - 403 598 - -
Cone4ag0439 598 MobiDBLite consensus disorder prediction 178 407 - -
Cone4ag0439 598 Coils Coil 37 69 - -
Cone4ag0439 598 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 588 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Cone4ag0439 598 Gene3D - 1 191 - -
Cone4ag0439 598 SMART if4_15 1 178 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone4ag0439 598 SUPERFAMILY ARM repeat 404 595 IPR016024 -
Cone4ag0439 598 Pfam MA3 domain 416 521 IPR003891 -
Cone4ag0439 598 MobiDBLite consensus disorder prediction 367 407 - -
Cone4ag0439 598 MobiDBLite consensus disorder prediction 178 202 - -
Cone4ag0439 598 MobiDBLite consensus disorder prediction 47 74 - -
Cone4ag0439 598 SMART ma3_7 411 525 IPR003891 -
Cone4ag0439 598 FunFam Eukaryotic translation initiation factor 4G 404 597 - -
Cone4ag0439 598 Pfam MIF4G domain 2 178 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone4ag0439 598 ProSiteProfiles MI domain profile. 410 534 IPR003891 -
Cone4ag0439 598 MobiDBLite consensus disorder prediction 233 248 - -
Cone4ag0439 598 SUPERFAMILY ARM repeat 1 180 IPR016024 -
Cone4ag0439 598 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0439 Cone-Chr4:1963385 Cone4ag0588 Cone-Chr4:2701407 8.58E-36 dispersed
Cone14ag0263 Cone-Chr14:1205901 Cone4ag0439 Cone-Chr4:1963385 1.06E-248 wgd
Cone15ag0282 Cone-Chr15:1314016 Cone4ag0439 Cone-Chr4:1963385 1.23E-247 wgd
Cone4ag0439 Cone-Chr4:1963385 Cone7ag0426 Cone-Chr7:1891171 1.70E-242 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0439 K03260 - mdm:103445060 834.328