Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0460 ATGAAGTTTGCAAAGCAATTCTTTGCTAGTTTGATTGCACTTGTACTTCTGCTCACACTTCTATCTCCAGGTTTCATAAACCCTTCATTTGAGCGAATCAAGGGTTTGATCAGGATAACAGCCTCGCAATGTCAGCATGGTTCAAGAGACGAGGAAATCCCTAGAGACAAACACCTTGGGGGACTTCTTACTCCTGGCCTGAATGAAGAAACTTGCTTGAGTAGGTACCAATCTAGCTTATACCGAAAAACTTCACTCCACATACCTTCTCCATATCTCCTATCAAAACTAAGAGCTTACGAAGATCTTCATGCACGATGTGGACCCGGTTCGGCATACTACAAGGAACTATCGGACAGCCTCAAGTCCGGAAAAAACACAACTTCCACAGAATGCAAGTATCTTGTGATTTTAACAAGAAACGGCCTAGGAAACCGAATACTTGCCATGGCTTCGGCTTTCCTCTATGCACTTCTCACTAACCGTGTCTTACTTGTCAAAGGAACTGGCCTGGACGATCTATTCTGCGAACCATTCCCAGAGAAGTCATGGTTTCTTCCAAGGGATTTTCCTCTCAGGGGGCAATTCCATCAATTTACCCCGTGGTTTCTGCGATCTTTTGGTAACCTACGAAAAAACAACATGTCGATAATCCCACCGGAGTTAGAATCACCACCTTCATACTTATTTCTCCATCTTGCCCATGAGGCTAGTAATTATGATAAACTATTCTTTTGTGATGAAGACCAAGCCCTTCTGAAAAATGTCCCTTTGTTAATTGCCCAAACAAATAACTACATCATCCCAGCTTTCTTTTTTGTGCCTTCCTTCGAAAAAGAGTTAAACAAACTATTCCCAAGAAAAGACACCGTCTTTCATCATATAAGTAGGTATCTCTTTCACCCCACAAATGAAGTATGGGGACTAATTACAAGGTCCTATGATGCTTATTTAAGTAAAGCAAAGGAGAAGATCGGAATTCAAATTCGGATTCACGATTCGGAATCACCTCACTTCGAGCATCATATGGACAAAATCCTTGCTTGTCTCCAAAAGGAGAAATTGCTTCCACAAACAGAAGATCCTGCAACTGACAACATCACAAACACATCTTCATCGAAAATCGGGGAAGTGAAAACCGTGTTAATAACCTCTTTATATTCTCGTTACCAAGAGAGTTTAAAGAACATTTATTGGGAACATCCAAATGCAAATGGAGACATAATTAGTGTATATCAACCAAGCCATGAAGAGGTTGAAAAATATGGCGAAGAGATGCACAAGAGAAAAGCATTGGCCGAAATATTTCTATTAAGTTTTAGTGATGTTTTGGTCACCAGTGCCTGGTCTACGTTTGGCTATGTGGCGCAAGGGCTTGCCGGGGTGGAGCCATGGATTCTGTACAAGCTTGAAGATACTGCTTATAAGGGTTTGGAAGAATGGCTTCCATACAAGAATGAAAATCTTACTGCCCATAGTTTGCCTTGTGAGAGAGCTAGGTCAATGGAGCCTTGTTTTCATGCACCACCACTTTGTGATTGTAGTGCAGTGACAAGGATTGATGCTGGAAAAGTGGTACCTTATGTGAATCATTGTGAGGATTTGAGTTGGGGTATTAAGCTCTTTGATCGATAG 1635 41.47 MKFAKQFFASLIALVLLLTLLSPGFINPSFERIKGLIRITASQCQHGSRDEEIPRDKHLGGLLTPGLNEETCLSRYQSSLYRKTSLHIPSPYLLSKLRAYEDLHARCGPGSAYYKELSDSLKSGKNTTSTECKYLVILTRNGLGNRILAMASAFLYALLTNRVLLVKGTGLDDLFCEPFPEKSWFLPRDFPLRGQFHQFTPWFLRSFGNLRKNNMSIIPPELESPPSYLFLHLAHEASNYDKLFFCDEDQALLKNVPLLIAQTNNYIIPAFFFVPSFEKELNKLFPRKDTVFHHISRYLFHPTNEVWGLITRSYDAYLSKAKEKIGIQIRIHDSESPHFEHHMDKILACLQKEKLLPQTEDPATDNITNTSSSKIGEVKTVLITSLYSRYQESLKNIYWEHPNANGDIISVYQPSHEEVEKYGEEMHKRKALAEIFLLSFSDVLVTSAWSTFGYVAQGLAGVEPWILYKLEDTAYKGLEEWLPYKNENLTAHSLPCERARSMEPCFHAPPLCDCSAVTRIDAGKVVPYVNHCEDLSWGIKLFDR 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2042425 2044274 + Conep04aG0047400.1 Cone4ag0460 435438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0460 544 PANTHER FUCOSYLTRANSFERASE 2-RELATED 9 543 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cone4ag0460 544 FunFam Galactoside 2-alpha-L-fucosyltransferase 130 180 - -
Cone4ag0460 544 Gene3D - 129 185 - -
Cone4ag0460 544 Pfam Xyloglucan fucosyltransferase 45 514 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0975 Cone-Chr14:7989312 Cone4ag0460 Cone-Chr4:2042425 2.58E-159 dispersed
Cone14ag0976 Cone-Chr14:7997921 Cone4ag0460 Cone-Chr4:2042425 0 dispersed
Cone16ag0180 Cone-Chr16:1166158 Cone4ag0460 Cone-Chr4:2042425 2.38E-176 dispersed
Cone19ag0932 Cone-Chr19:7162248 Cone4ag0460 Cone-Chr4:2042425 1.53E-19 dispersed
Cone19ag0933 Cone-Chr19:7163228 Cone4ag0460 Cone-Chr4:2042425 1.21E-18 dispersed
Cone2ag0834 Cone-Chr2:34356174 Cone4ag0460 Cone-Chr4:2042425 9.40E-179 dispersed
Cone4ag0460 Cone-Chr4:2042425 Cone15ag0967 Cone-Chr15:7684974 1.88E-254 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0460 K13681 - csv:101222105 584.719