Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0469 ATGGCTGGCTTAGACTTGGGCTCAGCTTCTCGCTTTGTTCATCAACTCCAAACCCGCCCTGATCTCCACCTCCAACGTCCACCCGATCACTCCGATGATGGCACCGATCACAATCATTACTCGGAAGCGGACGGTAATGAAACCGCCGCTGGTCACCACAACTCTGGCTCGGGCGACCTTGTGGTCCGCCGACCCAGAGGCCGGCCCCCGGGTTCCAAAAACAAACCGAAACCTCCGGTCATCATAACGCGTGAAAGCGCAAACACCTTACGAGCTCATATCCTCGAGATCAGCAGCGGATGCGATGTGTTTGAATCGGTGGCTACTTACGCCAGAAAGCGTCAACGTGGGATCTGTATCCTGAGCGGGAGTGGGACCGTCACGAATGTTAGTTTAAGACAACCGGCCGCAGCAGGTGCGGTGGTGACACTTCATGGGCGGTTCGAGATATTGTCTTTGTCAGGATCATTTTTGCCGCCGCCAGCTCCTCCCGGTGCTACTAGTTTGACCATTTTTTTGGCAGGGGGACAAGGTCAAGTTGTCGGGGGAAATGTCGTGGGTGCTTTAATTGCTTCTGGGCCGGTAATTGTTATGGCATCATCGTTTACTAACGTAGCGTACGAGAGGTTACCGCTTGACGAAGAGGAGCCTGCTATGCAGCAGTCCGGCGGTGGTGGCGGCGGAGATGGCAGTGGTGGTAATAATCCGTTCTCGGACCCGTCGAATTCGGGGTTGCCGTTCTTCAATCTGCCATTGAATATGCCGAATCAGAATCAATTACCCATAGATGGGTGGGCTGGAAATTCAACGGGGCGGTCTTCTTATTGA 828 54.11 MAGLDLGSASRFVHQLQTRPDLHLQRPPDHSDDGTDHNHYSEADGNETAAGHHNSGSGDLVVRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEISSGCDVFESVATYARKRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVMASSFTNVAYERLPLDEEEPAMQQSGGGGGGDGSGGNNPFSDPSNSGLPFFNLPLNMPNQNQLPIDGWAGNSTGRSSY 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2073441 2074268 - Conep04aG0048300.1 Cone4ag0469 435447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0469 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 203 IPR005175 -
Cone4ag0469 275 MobiDBLite consensus disorder prediction 17 81 - -
Cone4ag0469 275 Gene3D - 90 220 - -
Cone4ag0469 275 ProSiteProfiles PPC domain profile profile. 87 224 IPR005175 -
Cone4ag0469 275 MobiDBLite consensus disorder prediction 234 275 - -
Cone4ag0469 275 MobiDBLite consensus disorder prediction 23 43 - -
Cone4ag0469 275 CDD DUF296 91 174 IPR005175 -
Cone4ag0469 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 219 - -
Cone4ag0469 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 254 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone4ag0469 275 MobiDBLite consensus disorder prediction 216 275 - -
Cone4ag0469 275 FunFam AT-hook motif nuclear-localized protein 90 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0469 Cone-Chr4:2073441 Cone8ag0466 Cone-Chr8:3052220 8.26E-91 dispersed
Cone4ag0469 Cone-Chr4:2073441 Cone7ag0452 Cone-Chr7:2047086 2.45E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0469 - - - 0.0