Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0484 ATGGCATCTCGAATTTCAGTTCTTGTACCTCTTTTCATCATCTCCTTTGCTCTATCTTCAACTACCATTTTCGGCTACAATAAGAAAGACATCGAAAGTTGGTGTAGCCAAACTCCTTATCCGCAACCATGTGAATATTTCTTGAGCCACAAGTATCCTAATAACACCACCCCCATCAAACAAAAGTCTGATTTCCTCAAAATATTGACCAACCTCGCCCTAGAGCGTTCCATTCATGCCGAAAAGAACACGCAGACACTCGGCCATAAGTGCAAAAACCTCCGTGAAAAGGCAGCATGGGCCGATTGTCTCGAGCTGTACGAATACACCACCCTCAGGCTTAACCACACTGCTGATCCAAACATCAAATGCTCCCAAGAAGATGCACAGACATGGCTCAGCACCGCTTTGACTAACTTGGAGACATGTCGGGCCGGGTTTGTTGAGCTCGGGGTGGCCGATAACGTCTTACCTTTGATGTCAAACAATGTTTCCAAGTTGATAAGCAATAGTTTGGCCATGAACAAAGTACCATACAACCCTAAACCTAGCACTCCTAAAGGGTTTCCAACTTGGGTCAAACCGGGTGATCGGAAGCTTTTGCAATCATCCTCTGCGGCTTCAAGTGCAAACTTGGTGGTTGCTCAGGATGGGTCGGGGAATTACAAGACGATTAACGAGGCCATAACTGCAGCCTCGAAGCGATCGGGAAGTGGAAGATATGTTATCTACGTCAAAGCGGGGACGTATACGGAAAATGTTCAGATAAAGTTGAACAACATCATGCTTGTGGGTGATGGGATTGGAAAAACTATCGTTACCGGGAGCAAAAGCGTCGGTGGAGGCACTACTACCTTTAACTCTGCTACCGTCGCTGCTACCGGAGATGGATTTATAGCTCAAGACATCACCTTTAGAAACACGGCCGGAGCAGCCAACCAGCAAGCGGTTGCATTCCGATCTGGGTCCGATCTTTCAGTGTTCTATAGGTGCAGCTTTGAAGGCTACCAAGACACCCTTTATGTCCATTCAGAAAGACAATTCTATAGAGAATGTGACATTTACGGCACGGTTGACTTCATATTTGGTAATGCTGCAGTTGTTTTCCAGAACTGTAATATATATGCTCGTAAACCACCAAACGGTACCAACACAATCACTGCTCAAGGCCGCACCGACCCTAACCAAAACACGGGAATTTCGATTCACAACAGTAAAGTTACGGCCGCTTCGGATTTGCAATCTTCTCCTGGTTCGGCAAAGACGTATTTGGGTAGGCCGTGGCAGGAGTATTCACGTACCGTCTTCATGAAGACTTATCTTGATAGTTTGATTAATTCAGCCGGGTGGTTAGAATGGAGTGGTACTTTCGCTCTAAAGACTTTGTATTATGGTGAGTATGCAAATACAGGCCCTGGAGCATCAACCGCAAATCGGGTCAAGTGGGCAGGCTTTCATGTTCTCACTGCTTCTGATGCTTCTAAGTTTACTGTCGGAAACTTTATCGCGGGTGGTTCTTGGTTGCCGGCTACCAAAGTGCCTTTTACTTCCGGCCTTTAA 1560 46.28 MASRISVLVPLFIISFALSSTTIFGYNKKDIESWCSQTPYPQPCEYFLSHKYPNNTTPIKQKSDFLKILTNLALERSIHAEKNTQTLGHKCKNLREKAAWADCLELYEYTTLRLNHTADPNIKCSQEDAQTWLSTALTNLETCRAGFVELGVADNVLPLMSNNVSKLISNSLAMNKVPYNPKPSTPKGFPTWVKPGDRKLLQSSSAASSANLVVAQDGSGNYKTINEAITAASKRSGSGRYVIYVKAGTYTENVQIKLNNIMLVGDGIGKTIVTGSKSVGGGTTTFNSATVAATGDGFIAQDITFRNTAGAANQQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPPNGTNTITAQGRTDPNQNTGISIHNSKVTAASDLQSSPGSAKTYLGRPWQEYSRTVFMKTYLDSLINSAGWLEWSGTFALKTLYYGEYANTGPGASTANRVKWAGFHVLTASDASKFTVGNFIAGGSWLPATKVPFTSGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2157022 2159283 - Conep04aG0050000.1 Cone4ag0484 435462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0484 519 Gene3D - 205 519 IPR012334 -
Cone4ag0484 519 SMART complete 245 422 IPR006633 -
Cone4ag0484 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Cone4ag0484 519 SMART PMEI_2 26 174 IPR006501 GO:0004857(InterPro)
Cone4ag0484 519 FunFam Pectinesterase 205 519 - -
Cone4ag0484 519 CDD PMEI-like_3 33 176 - -
Cone4ag0484 519 Pfam Pectinesterase 211 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone4ag0484 519 Pfam Plant invertase/pectin methylesterase inhibitor 30 174 IPR006501 GO:0004857(InterPro)
Cone4ag0484 519 NCBIfam pectinesterase inhibitor domain 6 177 IPR006501 GO:0004857(InterPro)
Cone4ag0484 519 SUPERFAMILY Pectin lyase-like 205 518 IPR011050 -
Cone4ag0484 519 PANTHER PECTINESTERASE 11 510 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone4ag0484 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 177 IPR035513 -
Cone4ag0484 519 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0484 Cone-Chr4:2157022 Cone5ag0802 Cone-Chr5:3450694 6.87E-227 dispersed
Cone4ag0484 Cone-Chr4:2157022 Cone4ag0485 Cone-Chr4:2163415 0 tandem
Cone6ag0294 Cone-Chr6:1354882 Cone4ag0484 Cone-Chr4:2157022 7.85E-183 transposed
Cone14ag0296 Cone-Chr14:1350625 Cone4ag0484 Cone-Chr4:2157022 6.07E-207 wgd
Cone15ag0321 Cone-Chr15:1465626 Cone4ag0484 Cone-Chr4:2157022 1.29E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0484 K01051 - vvi:100255703 812.372