Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0485 ATGGCATCTCGAATTGCTGTTCTTGTACCTCTTTTCATCATCTCCTTTGCTCTATCTTCAACTACCATTTTCGGCTACAATAAGAAAGACATCGAAAGTTGGTGTAGCCAAACTCCGTATCCGCAACCATGTGAATATTTCTTGAGCCACAAGTATCCTAATGACACCACCCCCATCAAACAAAAGTCTGATTTCCTCAAAATATTGACCAACCTCGCCCTAGAGCGTTCCATTCATGCCGAAAAGAACACGCAGACACTCGGCCATAAGTGCAAAAACCTCCGTGAAAAGGCAGCATGGGCCGACTGTCTCGAGCTGTACGAATACACCACCCTCAGGCTTAACCACACTGCTGATCCAAACATCAAATGCTCCCAAGAAGATGCACAGACATGGCTCAGCACCGCTTTGACTAACTTGGAGACATGTCGGGCCGGGTTTGTTGAGCTCGGGGTGGCCGATAACATCTTACCTTTGATGTCAAACAATGTTTCCAAGTTGATAAGCAATAGTTTGGCCATGAACAAAGTACCATACAACCCTAAACCTAGCACTCCTAAAGGGTTTCCAACTTGGGTCAAACCGGGTGATCGGAAGCTTTTGCAATCATCCTCTGCGGCTTCAAGTGCAAACTTGGTGGTTGCTCAGGATGGGTCGGGGAATTACAAGACGATTAACGAGGCCATAACTGCAGCCTCGAAGCGATCGGGAAGTGGAAGATATGTTATCTACGTCAAAGCGGGGACGTATACGGAAAATGTTCAGATAAAGTTGAAGAACATCATGCTTGTGGGTGATGGAATCGGAAAAACTATCGTTACCGGAAGCAAAAGCGTCGGTGGAGGCACTACTACCTTTAACTCTGCTACCGTCGCTGCTACCGGAGATGGATTTATAGCTCAAGACATCACCTTTAGAAACACGGCGGGAGCAGCCAACCACCAAGCGGTTGCATTCCGATCTGGGTCCGACCTTTCAGTGTTCTATAGGTGCAGCTTTGAAGGCTACCAAGACACCCTTTATGTCCATTCAGAAAGACAATTCTATAGAGAATGTGACATTTACGGCACGGTTGACTTCATATTTGGTAATGCTGCCGTTGTTTTCCAGAACTGTAATATATATGCTCGTAAACCACCAAACGGTACCAACACAATCACTGCTCAAGGCCGCACCGACCCTAACCAAAACACGGGAATTTCGATTCACAACAGTAAGGTTACGGCCGCTTCGGATTTGAAATCTTCTCCTAGTTCGGCAAAGACGTATTTGGGTAGGCCGTGGCAGGAGTATTCACGTACCGTCTTCATGAAGACTTATCTTGATAGTTTGATTAATTCAGCCGGGTGGTTAGAATGGAGTGGTACTTTCGCTCTAAAGACTTTGTATTATGGTGAGTATGCAAATACAGGCCCTGGAGCATCAACCGCAAATCGGGTCAAGTGGGCAGGCTTTCATGTTCTCACTGCTTCTGATGCTTCTAAGTTTACTGTCGGAAACTTTATCGCGGGTGGTTCTTGGTTGCCGGCTACCAAAGTGCCTTTTACTTCCGGCCTTTAA 1560 46.47 MASRIAVLVPLFIISFALSSTTIFGYNKKDIESWCSQTPYPQPCEYFLSHKYPNDTTPIKQKSDFLKILTNLALERSIHAEKNTQTLGHKCKNLREKAAWADCLELYEYTTLRLNHTADPNIKCSQEDAQTWLSTALTNLETCRAGFVELGVADNILPLMSNNVSKLISNSLAMNKVPYNPKPSTPKGFPTWVKPGDRKLLQSSSAASSANLVVAQDGSGNYKTINEAITAASKRSGSGRYVIYVKAGTYTENVQIKLKNIMLVGDGIGKTIVTGSKSVGGGTTTFNSATVAATGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPPNGTNTITAQGRTDPNQNTGISIHNSKVTAASDLKSSPSSAKTYLGRPWQEYSRTVFMKTYLDSLINSAGWLEWSGTFALKTLYYGEYANTGPGASTANRVKWAGFHVLTASDASKFTVGNFIAGGSWLPATKVPFTSGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2163415 2165390 - Conep04aG0050100.1 Cone4ag0485 435463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0485 519 CDD PMEI-like_3 33 176 - -
Cone4ag0485 519 FunFam Pectinesterase 205 519 - -
Cone4ag0485 519 Pfam Plant invertase/pectin methylesterase inhibitor 30 174 IPR006501 GO:0004857(InterPro)
Cone4ag0485 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 177 IPR035513 -
Cone4ag0485 519 NCBIfam pectinesterase inhibitor domain 9 177 IPR006501 GO:0004857(InterPro)
Cone4ag0485 519 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Cone4ag0485 519 SMART PMEI_2 26 174 IPR006501 GO:0004857(InterPro)
Cone4ag0485 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Cone4ag0485 519 SUPERFAMILY Pectin lyase-like 205 518 IPR011050 -
Cone4ag0485 519 Gene3D - 205 519 IPR012334 -
Cone4ag0485 519 Pfam Pectinesterase 211 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone4ag0485 519 PANTHER PECTINESTERASE 11 510 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0296 Cone-Chr14:1350625 Cone4ag0485 Cone-Chr4:2163415 1.72E-206 dispersed
Cone15ag0321 Cone-Chr15:1465626 Cone4ag0485 Cone-Chr4:2163415 1.16E-80 dispersed
Cone1ag1094 Cone-Chr1:55447008 Cone4ag0485 Cone-Chr4:2163415 4.55E-20 dispersed
Cone20ag0959 Cone-Chr20:6855559 Cone4ag0485 Cone-Chr4:2163415 1.61E-132 dispersed
Cone4ag0485 Cone-Chr4:2163415 Cone5ag0802 Cone-Chr5:3450694 5.14E-229 dispersed
Cone4ag0484 Cone-Chr4:2157022 Cone4ag0485 Cone-Chr4:2163415 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0485 K01051 - vvi:100255703 823.542