Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0515 | ATGGGATATAAATTTTCAAAGCAGGAGCCCGAGCAACAGAAACTGGGAGACCTGACTTTGGATTGTCAGCTGATAGATTATCTGAGCACGAAATCTTTTCTCCGTCAGTTGGTATCAAAGAAAAGAAGGCGAATGCTTGTTGCTGGTTATGATCTGGACATGTCATATATAACGGATCGGTTACTAGCCATGTCGTTTCCTGCTGAACATATGCGTGCAGTTTTTCGTAATCCTATCTGGCAGGTCAAGTCCGTACTGGACATGAGACATAAGGACCATTACAAGATTTATAATCTTTGTATAGAAGAAGCGTATGATCCATTGAAATTTCATGGGCGGGTGCAACGGTTTCCTTTTGACGACAACCATGTCCCGTCTCTACCCATGATTAAGCTTTTTTGTGAAAGTGTTTATTCATGGCTGTTGTGCCATCCTGATAATATTGCTGTTATACACTGCATGGTCTCTATTCCAAGTCAATGCCGTTATGTAGGCTACTGGGCAGAAGTACTTTCGTTTCCTAAGGGAGTTCATAATGGTCCTCCAGAAGTGAACTTGCCTACACGATGCCGGAGAGAGCTCCGGCGAATTCGGCTTTATGATACCATTAACATCCAATCAATCTTCTTTGTTGTCTCAGAGATGCAGGAAGTTTCAAATCAATTATACCGTCCGTCTGTGGAACTCACACGGAGTTGTTGCAGACAAATTAAGAGTGGCCATCAGAGAAACAACAGTCCCCATTATTATCTCTCATTTGTAGGAAGTAGTGAAGAGAATGAATCTGAATCAGAAGGGCCTCATCTGGTAGTCCAAATGGACACAGAGCGTCCCGTAATAAACCAGAAAACCTGTCTTGATTACTATTTCGATAAACCTTTACCAGTGACAGGTGATGTTCGTGTCATATTCTATGAAAAAATGAAAGGAGGGAGGCTCTTTTACACCTGCTTCAACACTGCTTTCATTAGGAACAGCTTGCTTCAGCTTACTGTGGGGGACTTGGATAAAGCCGGGAAAAGGGGGAGGTCGATATGCGGCCCTGCATTCTGCTTGGAGTTGCTGTTTGGTCCTGCTAATGCAAGTCACTCATTTTTTTCTCCGTCCAATGATGCCGGGTGA | 1122 | 43.4 | MGYKFSKQEPEQQKLGDLTLDCQLIDYLSTKSFLRQLVSKKRRRMLVAGYDLDMSYITDRLLAMSFPAEHMRAVFRNPIWQVKSVLDMRHKDHYKIYNLCIEEAYDPLKFHGRVQRFPFDDNHVPSLPMIKLFCESVYSWLLCHPDNIAVIHCMVSIPSQCRYVGYWAEVLSFPKGVHNGPPEVNLPTRCRRELRRIRLYDTINIQSIFFVVSEMQEVSNQLYRPSVELTRSCCRQIKSGHQRNNSPHYYLSFVGSSEENESESEGPHLVVQMDTERPVINQKTCLDYYFDKPLPVTGDVRVIFYEKMKGGRLFYTCFNTAFIRNSLLQLTVGDLDKAGKRGRSICGPAFCLELLFGPANASHSFFSPSNDAG | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2301581 | 2304291 | + | Conep04aG0053300.1 | Cone4ag0515 | 435493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0515 | 373 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 43 | 174 | IPR029023 | - | |
| Cone4ag0515 | 373 | Gene3D | Protein tyrosine phosphatase superfamily | 29 | 154 | IPR029021 | - | |
| Cone4ag0515 | 373 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 155 | 357 | IPR051281 | GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER) | |
| Cone4ag0515 | 373 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 263 | 358 | IPR035892 | - | |
| Cone4ag0515 | 373 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 51 | 154 | IPR029021 | - | |
| Cone4ag0515 | 373 | SMART | PTEN_C2_2 | 187 | 358 | IPR014020 | - | |
| Cone4ag0515 | 373 | Pfam | C2 domain of PTEN tumour-suppressor protein | 282 | 357 | IPR014020 | - | |
| Cone4ag0515 | 373 | ProSiteProfiles | C2 tensin-type domain profile. | 205 | 359 | IPR014020 | - | |
| Cone4ag0515 | 373 | Gene3D | - | 224 | 361 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag0515 | Cone-Chr4:2301581 | Cone8ag0143 | Cone-Chr8:749391 | 7.01E-30 | dispersed | |
| Cone4ag0515 | Cone-Chr4:2301581 | Cone7ag0488 | Cone-Chr7:2253238 | 8.91E-148 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0515 | K01110 | - | csv:101212127 | 527.324 |