Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0516 ATGGCGGCCACTAAACCTCAGAGGTCTCCCGAGAAGGTGGAAGACAGTATTCTTTGCAAAATCTTCCTTGTCTCTCTCACTGAATCGTCCGATTCAAGGATCATCTATCTAGAACAAACTGCGGCCGAAATCCTAAGCGAGGGCAAAGACTTACGGCTTTCTCGCGATTTGATGGAAATAGTTTTAATCGACCGTCTTTCCGGCGATTTCCCCTCTGCGCAACTTCCTTTTGATTACCTAGTCGGCTGCTATAGTCGAGCTTACGATGAAGGTAAGAAAATCACTTTCATGAAAGATAAGAACTTAAGGTCTGAGATGGAATTAGTCGTAAACCAAGCAAAGAAGCTAGTGGTTTCATTCTGTAGGATTCATTTAGGCAATCCCAAACTGTTTTCGGGTGGTAATTCTAATAAGAATTCGAAGAATTCGCCTTTATTGCCATTGATTTTCTCAGAGATTGGGAATGCATGGGATGGATATGGTGGAAGTAGTAGTAGAGTAAATCAGTCTCCACCTGGGTTTTTGGATGAGTTCTTTAAGGACTCAGATTTTGATACCTTGGACCCCATATTCAAAGGATTATATGAGGCTGTCAGGGCCAGTGTGCTTAATGTCTCGGCTTTGGGTAATTTTCAGCTTCCATTAAGGGCATTACGTTATTTGGTTCAAATTCCAATCGGGGCTAAGTCTCTTGTGAGTCATCCATGGTGGATTCCCAAAGAAGCGTATTTCAATGGTCGTGTGATTGAGATGACTAGCATTTTGGGGCCTTTTCTTCATGTTAGTGCTCTACCTGATCACATGCTTTTTAAGAGCCAGCCTGATGTAGGGCAGCAGTACTTTTCGGATATAGAAAATCGTAGGCCAGCGGACTTATTATCTGCATTCACCACCATAAAAACAGTGATGAATATCTTATATGATGGCCTATCAGACGTTCTTCTCATCCTTCTAAAGAATGCAGACACCCGTGAAAGAGTTCTTTCCTGTCTAGCTGAGATTATCAACTTAAACTCATCGAGAGCTCATATACAGGCTGATCCTCTCTCCTCTGCAAGTTCAGGCACATTCGTCAATCTCAGTGCTGTTATGCTTCGGCTTTGTGAGCCTTTTTTAGATGCAAACCTGACAAAAAGGGATAAAATCGATTCAAAATATATATTTTACAGTACCCGTTTAGATTTAAGAGGACTGACTGCTCTAAATGCTTCATCAGAAGAAGTTGCTGAATGGATTAAGAATAATTCTAACAGTCCAAGTACAATTGATACCTCTAAACAGTATACTGAAAGCGAAAACCGTTTGATTCGATCTCAAGAAACTTCCAGTTCTGGTAGTAACAATTCTGCAAAGCCAGCATCAAATGGTGAAAACACAAAGTTTCCGTTCATATGTGAATGCTTCTTTATGACCGCGAGGGGACTCAATTTGGGATTGTTGAAAGTACTTTCTGACTTCAGGCATTTAGGTCAGGACATTCAAAGAAGTGAAGATTCGCTCTCCACACTTAAAGCTATGCAAGAGCAAACACCTGATAATAAACAGCTAGTGGCTGATATAACTCGGCTTGAAAAAGAAATAGATATATATAAACAGGAAAAATATTGTATCGAAGCGCAAATATTGAGGGACGAGACACTATTTCAACGTGCCCTTTCTTTCTATCGATTAATGGTCATTTGGTTGGTTGGCTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAACTTGCCCTGTGGAATTTGCTTCCATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTGATATTCGCTTCCAGGATCCCAAAAGCTTTAGATGGCGTCTTACTGGACGATTTTATGAACTTCATCATCATGTTCATGGCAAGTCCAAACTACATCAGAAACCCTTACCTACGAGCAAAGATGGTTGAAGTCTTGAATGGCTGGATATCTCGTAGAAGTGGTCCATCTGCTACAGCTACTTTGTTTGAAGGGCACCAACTTGCTCTCCAGTATCTTGTGAGGAATCTTTTGAAGCTCTATGTTGATATTGAATTCACTGGCTCTCACAATCAGTTCTTTGAAAAATTCAATATCCGCCATGATATTGCAGAACTTCTTGAATACCTCTGGCAGGTTCCTAGTCATCGTAATGCTTGGAAACAGATTGCTAAGGAAGAGGAGAAGGGTGCCTATCTGAATTTCTTAAACTTCCTGATCAATGATAGCATCTACCTTCTCGATGGAAGCCTTAATACAATTCTTGAGCTAAAAGGGCTTGAAGCTGAGATGTCAAACACTGCAGAATGGGAGGGCCGACCGCAGCAAGAGAGACAAGAGAGAACACAGCTATTCCACTATCGAGAAAATATTATCAGGATTGATATGAAGCTAGCCAATCAGGATGTTAGCATGCTAGCATTTAGTTCAGAGCAGATCACTGACCCTTTCCTACTTCCTGAGATGGTTGATAGAGTTGCCAGCATGCTGAATTATTTTCTGTTGCAACTAGTCGGTCCTCAAAGAAAATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCGAAGGAATTGCTTAAGCAGATTGTTCAGATATATGTTCATCTCGCAAGAGGCGATTCAGAGAATATTTTTCCATCTGCTATATCAAAGGATGGACGATCATACAATGAGCAGTTGTTTACTGCTGCGGCAGTTGTTCTTAGAAGAATCAGAGAAGATGGAAGGATTATACAAGAATTTGTAGAGCTCGGTAACAAGGCCAAAGTTGCAGCATCTGAGGCCATGGATGCTGAAGCTGCTCTTGGAGAGATTCCGGACGAATTCCTTGACCCTATTCAATACACTTTAATGAAGGATCCAGTCATCTTGCCGTCTTCAAGGATTACAATCGACAGGCCGGTCATTCAGAGGCATCTCCTCAGTGATAGTACGGACCCATTTAATCGGTCCCATCTTACTGCGGACATGCTCATTCCGGACACTGAATTGAAAGCAAGGATCGAAGAGTTCATCAGATCACAAGAATCAAAGAGGTGA 3030 41.58 MAATKPQRSPEKVEDSILCKIFLVSLTESSDSRIIYLEQTAAEILSEGKDLRLSRDLMEIVLIDRLSGDFPSAQLPFDYLVGCYSRAYDEGKKITFMKDKNLRSEMELVVNQAKKLVVSFCRIHLGNPKLFSGGNSNKNSKNSPLLPLIFSEIGNAWDGYGGSSSRVNQSPPGFLDEFFKDSDFDTLDPIFKGLYEAVRASVLNVSALGNFQLPLRALRYLVQIPIGAKSLVSHPWWIPKEAYFNGRVIEMTSILGPFLHVSALPDHMLFKSQPDVGQQYFSDIENRRPADLLSAFTTIKTVMNILYDGLSDVLLILLKNADTRERVLSCLAEIINLNSSRAHIQADPLSSASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDSKYIFYSTRLDLRGLTALNASSEEVAEWIKNNSNSPSTIDTSKQYTESENRLIRSQETSSSGSNNSAKPASNGENTKFPFICECFFMTARGLNLGLLKVLSDFRHLGQDIQRSEDSLSTLKAMQEQTPDNKQLVADITRLEKEIDIYKQEKYCIEAQILRDETLFQRALSFYRLMVIWLVGLVGGFKMPLPSTCPVEFASMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPNYIRNPYLRAKMVEVLNGWISRRSGPSATATLFEGHQLALQYLVRNLLKLYVDIEFTGSHNQFFEKFNIRHDIAELLEYLWQVPSHRNAWKQIAKEEEKGAYLNFLNFLINDSIYLLDGSLNTILELKGLEAEMSNTAEWEGRPQQERQERTQLFHYRENIIRIDMKLANQDVSMLAFSSEQITDPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVQIYVHLARGDSENIFPSAISKDGRSYNEQLFTAAAVVLRRIREDGRIIQEFVELGNKAKVAASEAMDAEAALGEIPDEFLDPIQYTLMKDPVILPSSRITIDRPVIQRHLLSDSTDPFNRSHLTADMLIPDTELKARIEEFIRSQESKR 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2304843 2310580 + Conep04aG0053400.1 Cone4ag0516 435494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0516 1009 FunFam Ubiquitin conjugation factor e4 a 934 1009 - -
Cone4ag0516 1009 SMART Ubox_2 938 1001 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag0516 1009 SUPERFAMILY RING/U-box 927 1005 - -
Cone4ag0516 1009 ProSiteProfiles U-box domain profile. 934 1008 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag0516 1009 MobiDBLite consensus disorder prediction 415 454 - -
Cone4ag0516 1009 Coils Coil 513 540 - -
Cone4ag0516 1009 CDD RING-Ubox_UBE4A 937 1005 - -
Cone4ag0516 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 934 1009 IPR013083 -
Cone4ag0516 1009 Pfam U-box domain 935 1006 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag0516 1009 PANTHER UBIQUITINATION FACTOR E4 8 1008 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(PANTHER)|GO:0034450(InterPro)|GO:0036503(InterPro)
Cone4ag0516 1009 Pfam Ubiquitin elongating factor core 255 918 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0516 Cone-Chr4:2304843 Cone7ag0489 Cone-Chr7:2255531 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0516 K10597 - csv:101211398 1541.55