Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0517 ATGGAGGTTCAGAGAACAGGAATCTCAGGTGGCCGCCGGCTGCAGTCAATGGTGGCGCTGGCGGTGGTGCACTGTATCAGGGCAGCTATGCTGCCGGAAGTGTCAGCTACGCGGTGGACTGTGGGAGGTAACATGGGATGGACTAGTAATGTTAACTACACCATTTGGGCTCAAGATAAGCATTTCTACAATGGCGACTGGTTTTTTTTCGTGTACGATAGGAACCAAATGAATGTTCTGGAGGTGAACAAGACAGATTATGAGTCATGTAACTCGGACCACCCTCTCCACAACTGGACCACTGGGGCCGGAAGGGACGTGGTCCCACTGAATGTGACTAGACACTACTACTTCATAAGTGGCAGGGGCTTCTGCTATGGCGGCATGAAGCTGGCCGTCTCGGTTGAAAACCCACCTCCACCTCCCTTTGCTTCTCATGTAAAAGACAGTCCTATGAGGTCGGTCGAAAACCCATCTCCATCTCCCTCTCCCTCTCCTGTAAAAGACAGTGCTATGAGGTCGGTTGAAAACCCATCTCCACCTCCCTCTGCTTCTCCTGGAAAAGGCAGTGCTATGAGGTTAACTTCTGGTTGTCATGTTGTTTTGCCTTTGGTTTTTGCCACTGGTGCTATTTGGGATGCATTCGTTCGATACTGA 657 50.68 MEVQRTGISGGRRLQSMVALAVVHCIRAAMLPEVSATRWTVGGNMGWTSNVNYTIWAQDKHFYNGDWFFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGRGFCYGGMKLAVSVENPPPPPFASHVKDSPMRSVENPSPSPSPSPVKDSAMRSVENPSPPPSASPGKGSAMRLTSGCHVVLPLVFATGAIWDAFVRY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2314218 2315373 + Conep04aG0053500.1 Cone4ag0517 435495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0517 218 Gene3D - 35 138 IPR008972 -
Cone4ag0517 218 MobiDBLite consensus disorder prediction 142 190 - -
Cone4ag0517 218 PANTHER BLUE COPPER PROTEIN 25 151 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cone4ag0517 218 FunFam Lamin-like protein 35 138 - -
Cone4ag0517 218 Pfam Plastocyanin-like domain 47 129 IPR003245 GO:0009055(InterPro)
Cone4ag0517 218 SUPERFAMILY Cupredoxins 36 135 IPR008972 -
Cone4ag0517 218 ProSiteProfiles Phytocyanin domain profile. 37 137 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0517 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0947 Cone-Chr11:7723267 Cone4ag0517 Cone-Chr4:2314218 3.83E-29 dispersed
Cone3ag1360 Cone-Chr3:32598252 Cone4ag0517 Cone-Chr4:2314218 2.34E-14 dispersed
Cone4ag0517 Cone-Chr4:2314218 Cone7ag0492 Cone-Chr7:2266053 1.87E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone8ag0534 . 30 170 Phytocyanin Superfamily AT1G64640 60.1 1.5e-39 160.2
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone5ag1429 . 1 225 Phytocyanin Superfamily AT1G08500 54.4 7.8e-64 241.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38