Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0520 ATGGCGAAGAAACAAGAACCTACAAGAGATTCAGCTCCACCGCCACGGCCAACTATCACTCTACCACCTCGGCCGTCTGCGGATGCGTTTTTCTACGGCGGAGCCGGAGCAAGCCCTGGCCCAATGACTCTCGTGTCTAGCTTCTTCTCCGATAACTCGTCTGGCTCACCCTCCTTCTCTCAACTTCTAGCCGGAGCGATGGGCTCGCCTATGGGTACGGGTATGGGTATGAGCTTCTACGGGTCTGATTCGACCCAACATAACTCTTCTTCAAACGACGGAGGAATACTAAACGGTCTGTCTGAGAAGAATTCTAGCTTTAAGCAGAATAGGCCGATGGGTTTAACGGTTCCTTTCTCTCCACTATTCACAATTCCGCCTGGTTTGAGCCCCTCTGGTTTGCTTAACTCGCCTGGATTCTTTTCCCCTCGGAGTCCCTTTGGAATGTCCCACCAACAAGCCTTAGCTCGGGTCACAGCCCAAGCGGGACTAGCCCAATCCCAAATCCATATCCAACCCGAATACCAACCTTCTTCATTACCACCCAGTCCACCCCTGACCGAGTCCTCAGCCCATCATTCTTCTTCTCTTTCCCTAGAGGAACCTTCACATCAGCAAAACCCAATGGCTCTATCAACATCAGAACCTAACACGAAAATTCGACCCATTTCCCATACATGTGATAAACCCACAGATGATGGCTACAACTGGAGAAAGTATGGACAAAAACAAGTTAAGGGGAGTGAGTATCCAAGAAGCTACTACAAGTGTACTCATCTAAATTGCCCGGTTAAAAAGAAGGTAGAGTTTTCTTCAAATGGTCAGGTGACAGAGATTATATACAGAGGCAAGCACAACCATGACTTGCCTCAGACGAATAGGCGGGCAAAAGACAGTAGTGAGCCATATGGGCATCTAACAAATTCTCAGCCTAAGATGGAAGTTGATTCTCATAGCAAGCATGAGATAAATCAAGAATGTGCTCAAGCTGGTCCGGTTCCAGTACCAGAGTCAAGTGATGTGGATGAGTTAGGGGATGTAGAGACGACACAAGATGGGGACGGGCATGAGCCGAACGCTAAGAGAAGGATCTTGGATGCTGGTACATCAATAGTTGGTTTGTCGCAAAAGCTTATTACAGAACCGAAAATCATTTTGCAAACAAGGAGTGAAGTTGACCTTTTAGATGATGGGTACAGGTGGCGCAAGTACGGGCAGAAAGTGGTCAAAGGGAATCCTTATCCCAGGAGCTATTACAAATGCACTACAGGAGGATGCAATGTCCGAAAGCACGTGGAGAGGGCTTCAACTGACCCAAATGCCGTCATAACTACCTATGAAGGGAAACACAACCACCAAGTCCCAGCTGCTAGAAACAGCAGCCACAACACAGCCATGGCCGCCAATGCACCACAGCCTCTGAAACCACAACCGGCAGCACATCAAGCTGCAGCTCAGAACATGCATCCATTACTTAATGAGTTGGATTTCGGAAACAACAACCAGAGACCAGGTGTTCTTCGCCTCAAAGACGAGCAAATCACTGTCTAG 1551 48.36 MAKKQEPTRDSAPPPRPTITLPPRPSADAFFYGGAGASPGPMTLVSSFFSDNSSGSPSFSQLLAGAMGSPMGTGMGMSFYGSDSTQHNSSSNDGGILNGLSEKNSSFKQNRPMGLTVPFSPLFTIPPGLSPSGLLNSPGFFSPRSPFGMSHQQALARVTAQAGLAQSQIHIQPEYQPSSLPPSPPLTESSAHHSSSLSLEEPSHQQNPMALSTSEPNTKIRPISHTCDKPTDDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVEFSSNGQVTEIIYRGKHNHDLPQTNRRAKDSSEPYGHLTNSQPKMEVDSHSKHEINQECAQAGPVPVPESSDVDELGDVETTQDGDGHEPNAKRRILDAGTSIVGLSQKLITEPKIILQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTGGCNVRKHVERASTDPNAVITTYEGKHNHQVPAARNSSHNTAMAANAPQPLKPQPAAHQAAAQNMHPLLNELDFGNNNQRPGVLRLKDEQITV 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2323337 2326556 + Conep04aG0053800.1 Cone4ag0520 435498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0520 516 SMART WRKY_cls 395 454 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 SMART WRKY_cls 231 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 MobiDBLite consensus disorder prediction 1 33 - -
Cone4ag0520 516 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 Pfam WRKY DNA -binding domain 396 453 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 SUPERFAMILY WRKY DNA-binding domain 229 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 MobiDBLite consensus disorder prediction 185 221 - -
Cone4ag0520 516 SUPERFAMILY WRKY DNA-binding domain 387 455 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 ProSiteProfiles WRKY domain profile. 390 455 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 FunFam WRKY transcription factor 221 291 - -
Cone4ag0520 516 Gene3D WRKY domain 220 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 Gene3D WRKY domain 380 456 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 MobiDBLite consensus disorder prediction 77 108 - -
Cone4ag0520 516 MobiDBLite consensus disorder prediction 284 360 - -
Cone4ag0520 516 FunFam WRKY transcription factor 57 381 455 - -
Cone4ag0520 516 MobiDBLite consensus disorder prediction 174 227 - -
Cone4ag0520 516 ProSiteProfiles WRKY domain profile. 232 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag0520 516 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 170 480 IPR044810 GO:0003700(InterPro)
Cone4ag0520 516 MobiDBLite consensus disorder prediction 284 301 - -
Cone4ag0520 516 MobiDBLite consensus disorder prediction 78 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0520 Cone-Chr4:2323337 Cone6ag0027 Cone-Chr6:172101 4.45E-75 dispersed
Cone16ag0479 Cone-Chr16:6955697 Cone4ag0520 Cone-Chr4:2323337 1.16E-186 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone4ag0520 Cone-Chr4:2323337 1.13E-182 wgd
Cone4ag0520 Cone-Chr4:2323337 Cone6ag0556 Cone-Chr6:2738542 2.56E-58 wgd
Cone4ag0520 Cone-Chr4:2323337 Cone7ag0493 Cone-Chr7:2269946 0 wgd
Cone4ag0520 Cone-Chr4:2323337 Cone9ag0551 Cone-Chr9:2624393 7.95E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45925 PF00400 WD40 0.0073 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0520 - - - 0.0