Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0520 | ATGGCGAAGAAACAAGAACCTACAAGAGATTCAGCTCCACCGCCACGGCCAACTATCACTCTACCACCTCGGCCGTCTGCGGATGCGTTTTTCTACGGCGGAGCCGGAGCAAGCCCTGGCCCAATGACTCTCGTGTCTAGCTTCTTCTCCGATAACTCGTCTGGCTCACCCTCCTTCTCTCAACTTCTAGCCGGAGCGATGGGCTCGCCTATGGGTACGGGTATGGGTATGAGCTTCTACGGGTCTGATTCGACCCAACATAACTCTTCTTCAAACGACGGAGGAATACTAAACGGTCTGTCTGAGAAGAATTCTAGCTTTAAGCAGAATAGGCCGATGGGTTTAACGGTTCCTTTCTCTCCACTATTCACAATTCCGCCTGGTTTGAGCCCCTCTGGTTTGCTTAACTCGCCTGGATTCTTTTCCCCTCGGAGTCCCTTTGGAATGTCCCACCAACAAGCCTTAGCTCGGGTCACAGCCCAAGCGGGACTAGCCCAATCCCAAATCCATATCCAACCCGAATACCAACCTTCTTCATTACCACCCAGTCCACCCCTGACCGAGTCCTCAGCCCATCATTCTTCTTCTCTTTCCCTAGAGGAACCTTCACATCAGCAAAACCCAATGGCTCTATCAACATCAGAACCTAACACGAAAATTCGACCCATTTCCCATACATGTGATAAACCCACAGATGATGGCTACAACTGGAGAAAGTATGGACAAAAACAAGTTAAGGGGAGTGAGTATCCAAGAAGCTACTACAAGTGTACTCATCTAAATTGCCCGGTTAAAAAGAAGGTAGAGTTTTCTTCAAATGGTCAGGTGACAGAGATTATATACAGAGGCAAGCACAACCATGACTTGCCTCAGACGAATAGGCGGGCAAAAGACAGTAGTGAGCCATATGGGCATCTAACAAATTCTCAGCCTAAGATGGAAGTTGATTCTCATAGCAAGCATGAGATAAATCAAGAATGTGCTCAAGCTGGTCCGGTTCCAGTACCAGAGTCAAGTGATGTGGATGAGTTAGGGGATGTAGAGACGACACAAGATGGGGACGGGCATGAGCCGAACGCTAAGAGAAGGATCTTGGATGCTGGTACATCAATAGTTGGTTTGTCGCAAAAGCTTATTACAGAACCGAAAATCATTTTGCAAACAAGGAGTGAAGTTGACCTTTTAGATGATGGGTACAGGTGGCGCAAGTACGGGCAGAAAGTGGTCAAAGGGAATCCTTATCCCAGGAGCTATTACAAATGCACTACAGGAGGATGCAATGTCCGAAAGCACGTGGAGAGGGCTTCAACTGACCCAAATGCCGTCATAACTACCTATGAAGGGAAACACAACCACCAAGTCCCAGCTGCTAGAAACAGCAGCCACAACACAGCCATGGCCGCCAATGCACCACAGCCTCTGAAACCACAACCGGCAGCACATCAAGCTGCAGCTCAGAACATGCATCCATTACTTAATGAGTTGGATTTCGGAAACAACAACCAGAGACCAGGTGTTCTTCGCCTCAAAGACGAGCAAATCACTGTCTAG | 1551 | 48.36 | MAKKQEPTRDSAPPPRPTITLPPRPSADAFFYGGAGASPGPMTLVSSFFSDNSSGSPSFSQLLAGAMGSPMGTGMGMSFYGSDSTQHNSSSNDGGILNGLSEKNSSFKQNRPMGLTVPFSPLFTIPPGLSPSGLLNSPGFFSPRSPFGMSHQQALARVTAQAGLAQSQIHIQPEYQPSSLPPSPPLTESSAHHSSSLSLEEPSHQQNPMALSTSEPNTKIRPISHTCDKPTDDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVEFSSNGQVTEIIYRGKHNHDLPQTNRRAKDSSEPYGHLTNSQPKMEVDSHSKHEINQECAQAGPVPVPESSDVDELGDVETTQDGDGHEPNAKRRILDAGTSIVGLSQKLITEPKIILQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTGGCNVRKHVERASTDPNAVITTYEGKHNHQVPAARNSSHNTAMAANAPQPLKPQPAAHQAAAQNMHPLLNELDFGNNNQRPGVLRLKDEQITV | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2323337 | 2326556 | + | Conep04aG0053800.1 | Cone4ag0520 | 435498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0520 | 516 | SMART | WRKY_cls | 395 | 454 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | SMART | WRKY_cls | 231 | 289 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cone4ag0520 | 516 | Pfam | WRKY DNA -binding domain | 232 | 288 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | Pfam | WRKY DNA -binding domain | 396 | 453 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | SUPERFAMILY | WRKY DNA-binding domain | 229 | 290 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | MobiDBLite | consensus disorder prediction | 185 | 221 | - | - | |
Cone4ag0520 | 516 | SUPERFAMILY | WRKY DNA-binding domain | 387 | 455 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | ProSiteProfiles | WRKY domain profile. | 390 | 455 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | FunFam | WRKY transcription factor | 221 | 291 | - | - | |
Cone4ag0520 | 516 | Gene3D | WRKY domain | 220 | 291 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | Gene3D | WRKY domain | 380 | 456 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | MobiDBLite | consensus disorder prediction | 77 | 108 | - | - | |
Cone4ag0520 | 516 | MobiDBLite | consensus disorder prediction | 284 | 360 | - | - | |
Cone4ag0520 | 516 | FunFam | WRKY transcription factor 57 | 381 | 455 | - | - | |
Cone4ag0520 | 516 | MobiDBLite | consensus disorder prediction | 174 | 227 | - | - | |
Cone4ag0520 | 516 | ProSiteProfiles | WRKY domain profile. | 232 | 290 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone4ag0520 | 516 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 170 | 480 | IPR044810 | GO:0003700(InterPro) | |
Cone4ag0520 | 516 | MobiDBLite | consensus disorder prediction | 284 | 301 | - | - | |
Cone4ag0520 | 516 | MobiDBLite | consensus disorder prediction | 78 | 108 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag0520 | Cone-Chr4:2323337 | Cone6ag0027 | Cone-Chr6:172101 | 4.45E-75 | dispersed | |
Cone16ag0479 | Cone-Chr16:6955697 | Cone4ag0520 | Cone-Chr4:2323337 | 1.16E-186 | wgd | |
Cone2ag0536 | Cone-Chr2:2960579 | Cone4ag0520 | Cone-Chr4:2323337 | 1.13E-182 | wgd | |
Cone4ag0520 | Cone-Chr4:2323337 | Cone6ag0556 | Cone-Chr6:2738542 | 2.56E-58 | wgd | |
Cone4ag0520 | Cone-Chr4:2323337 | Cone7ag0493 | Cone-Chr7:2269946 | 0 | wgd | |
Cone4ag0520 | Cone-Chr4:2323337 | Cone9ag0551 | Cone-Chr9:2624393 | 7.95E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45925 | PF00400 | WD40 | 0.0073 | CL0186 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0520 | - | - | - | 0.0 |