Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0531 | ATGAGGGAAAAAATGGGCTACTATGAAATCCTTCTGGTTGCGTTCTTCTCAATGGCATCATCTGTTTGTGGGTACTATGGAGGTTGGTCTAATGCTCATGCCACTTTCTATGGAGGATCCGATGCTTCCGGGACGATGGGTGGGGCATGTGGGTATGGAAACCTTTACAGCCAAGGATATGGGACAAACACAGCAGCATTGAGCACAGCATTGTTTGAGAATGGACTGAGCTGCGGAGCATGTTTCGAGCTTAGATGTGTAAATGACCCGCAATGGTGTCTTTCCGGCACCATTGTGGTCACTGCTACCAATTTCTGCCCGCCAGGCGGGTGGTGTGATCCTCCTCAACACCACTTTGATCTCTCTCAGCCAATCTTTCAACACATAGCTCAATATAGAGCTGGAGTTGTCCCTGTGTCTTACAGAAGGGTAAGATGCAAAAGAAGTGGAGGAATCAGATTCACAATCAACGGCCACTCATACTTCAACCTAGTCCTAATCACTAACGTAGGTGGTGCTGGTGATGTCCATGCTGTGTCCATAAAGGGCTCAAGGACTAGATGGCAGCCTATGTCAAGGAACTGGGGTCAAAACTGGCAAAGCAATTCATACCTCAACGGTCAAAGCCTTTCCTTCTTAGTCACAACAAGTGATGGTCGGAGTTTGATCTCTTACAACGTGGCTCCTTCTAGTTGGTCGTTTGGTCAGACCTATAGCGGACGACAGTTTCTGTATTAG | 738 | 47.56 | MREKMGYYEILLVAFFSMASSVCGYYGGWSNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFENGLSCGACFELRCVNDPQWCLSGTIVVTATNFCPPGGWCDPPQHHFDLSQPIFQHIAQYRAGVVPVSYRRVRCKRSGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSLISYNVAPSSWSFGQTYSGRQFLY | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2389577 | 2391081 | + | Conep04aG0055100.1 | Cone4ag0531 | 435509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0531 | 245 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 47 | 151 | IPR007112 | - | |
| Cone4ag0531 | 245 | Pfam | Lytic transglycolase | 64 | 141 | IPR009009 | - | |
| Cone4ag0531 | 245 | Gene3D | - | 14 | 147 | IPR036908 | - | |
| Cone4ag0531 | 245 | PANTHER | EXPANSIN-A15 | 15 | 243 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | CDD | DPBB_EXPA_N | 28 | 146 | - | - | |
| Cone4ag0531 | 245 | PRINTS | Expansin/Lol pI family signature | 28 | 43 | IPR007118 | GO:0005576(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin/Lol pI family signature | 226 | 240 | IPR007118 | GO:0005576(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin/Lol pI family signature | 188 | 202 | IPR007118 | GO:0005576(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin/Lol pI family signature | 134 | 150 | IPR007118 | GO:0005576(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin/Lol pI family signature | 46 | 64 | IPR007118 | GO:0005576(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin/Lol pI family signature | 68 | 86 | IPR007118 | GO:0005576(InterPro) | |
| Cone4ag0531 | 245 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 161 | 240 | IPR007117 | - | |
| Cone4ag0531 | 245 | SUPERFAMILY | PHL pollen allergen | 148 | 239 | IPR036749 | - | |
| Cone4ag0531 | 245 | FunFam | Expansin | 19 | 147 | - | - | |
| Cone4ag0531 | 245 | SUPERFAMILY | Barwin-like endoglucanases | 13 | 169 | IPR036908 | - | |
| Cone4ag0531 | 245 | SMART | dpbb_1 | 64 | 141 | IPR007112 | - | |
| Cone4ag0531 | 245 | FunFam | Expansin | 151 | 243 | - | - | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 59 | 73 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 162 | 183 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 226 | 242 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 109 | 126 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 197 | 218 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 150 | 162 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 126 | 139 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 86 | 97 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | PRINTS | Expansin signature | 98 | 108 | IPR002963 | GO:0009664(InterPro) | |
| Cone4ag0531 | 245 | Gene3D | - | 151 | 243 | IPR036749 | - | |
| Cone4ag0531 | 245 | Pfam | Expansin C-terminal domain | 152 | 229 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0949 | Cone-Chr13:8148708 | Cone4ag0531 | Cone-Chr4:2389577 | 1.20E-138 | dispersed | |
| Cone19ag0939 | Cone-Chr19:7191805 | Cone4ag0531 | Cone-Chr4:2389577 | 1.78E-140 | dispersed | |
| Cone4ag0531 | Cone-Chr4:2389577 | Cone5ag0142 | Cone-Chr5:611803 | 8.65E-134 | dispersed | |
| Cone4ag0531 | Cone-Chr4:2389577 | Cone6ag0576 | Cone-Chr6:2820883 | 1.47E-147 | wgd | |
| Cone4ag0531 | Cone-Chr4:2389577 | Cone7ag0505 | Cone-Chr7:2331133 | 1.47E-180 | wgd | |
| Cone4ag0531 | Cone-Chr4:2389577 | Cone9ag0581 | Cone-Chr9:2741577 | 2.09E-147 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0531 | K20628 | - | rcu:8261626 | 461.84 |