Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0542 ATGGATATAACCACCACCGCCACCAATCCCTCCTCCGCTGCTGCCACGGCCACGAACATAACAAGATCTCCGGAAGCTGAAAGCGAAACACCAATCAAGATCCAACCCATAAAGCCTCTACCTATCAGCAACGGAGTACTCAAGCGCCACCATCACCACCTCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGAATCATCACCACCATGTCATCATACCCTCCGCAACCACCACCACCTACAAAGAGTGTCTCAAAAACCATGCGGCCACCTTAGGAGCTCACGCTCTAGATGGCTGTGGAGAATTCATGCCATCTCCCACCGCCACGCCATCAGATCCCACCTCTCTAAAATGCGCTGCTTGCGGCTGCCACCGCAATTTCCACCGCCGGGAACCTGACCCCACCGCCTTTGCAACTACAGCCACTGCCACCCACGTGATCGAGTACCAACCTCACCACCGCCACCACCCACCGCCTCCACCTCCTCCGCAGCTGAATCGGAGCCCCAATTCAGCTTCCCCACCTCCAATCTCTTCCTCTTACTACCCATCAGCTCCCCACATGCTCTTAGCTCTATCAACCGGTCCTGGAACCGGGCCGAGCCCAATTAACGGGAGCCCGAATGCGAGGAAAAGGTTTAGAACGAAGTTCAGCCAAGAACAGAAAGAGAGGATGCATGAGCTTGCCGAACGAGTTGGATGGAAGATGCAGAAGAGAGATGAAGAGATCGTGCAAGAGTTCTGCCATGAAATCGGAATCGATAAGGGTGTTCTTAAAGTCTGGATGCATAATAACAAGAACACTTTGGGTAAGGTATCGTCGATGAATAACATGAAGGATGTCAATCATCATCATCACCATCATGTTCTAGAACATAACAATAGTTCCCACAACGACGTCATCAACGGCAAAAACGATGCCGTTCAGAATCAAATTATGAATCGTGAGTATGATGATGATGATGATGATGATGATGACGATGAAGATGATTAG 993 50.96 MDITTTATNPSSAAATATNITRSPEAESETPIKIQPIKPLPISNGVLKRHHHHLQQQQQQQQQQNHHHHVIIPSATTTTYKECLKNHAATLGAHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDPTAFATTATATHVIEYQPHHRHHPPPPPPPQLNRSPNSASPPPISSSYYPSAPHMLLALSTGPGTGPSPINGSPNARKRFRTKFSQEQKERMHELAERVGWKMQKRDEEIVQEFCHEIGIDKGVLKVWMHNNKNTLGKVSSMNNMKDVNHHHHHHVLEHNNSSHNDVINGKNDAVQNQIMNREYDDDDDDDDDDEDD 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2443471 2445056 + Conep04aG0056200.1 Cone4ag0542 435520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0542 330 MobiDBLite consensus disorder prediction 156 170 - -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 1 68 - -
Cone4ag0542 330 SUPERFAMILY Homeodomain-like 198 271 IPR009057 -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 316 330 - -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 150 209 - -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 310 330 - -
Cone4ag0542 330 FunFam Zinc-finger homeodomain protein 2 201 271 - -
Cone4ag0542 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 268 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone4ag0542 330 Pfam ZF-HD protein dimerisation region 78 132 IPR006456 -
Cone4ag0542 330 NCBIfam homeobox domain, ZF-HD class 210 267 IPR006455 -
Cone4ag0542 330 Gene3D - 201 271 - -
Cone4ag0542 330 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 131 IPR006456 -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 1 28 - -
Cone4ag0542 330 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 79 131 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0542 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0542 Cone-Chr4:2443471 Cone6ag1541 Cone-Chr6:12098444 8.19E-39 dispersed
Cone4ag0542 Cone-Chr4:2443471 Cone4ag0543 Cone-Chr4:2451409 2.43E-16 tandem
Cone16ag0849 Cone-Chr16:9062314 Cone4ag0542 Cone-Chr4:2443471 1.43E-68 wgd
Cone2ag0846 Cone-Chr2:34450051 Cone4ag0542 Cone-Chr4:2443471 5.51E-17 wgd
Cone2ag0193 Cone-Chr2:1019885 Cone4ag0542 Cone-Chr4:2443471 1.68E-79 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone6ag0586 Cone-Chr6:2878195 5.07E-40 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone7ag0516 Cone-Chr7:2383591 1.84E-131 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone9ag0589 Cone-Chr9:2782954 3.55E-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45929 None None None None Cone TF