Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0542 ATGGATATAACCACCACCGCCACCAATCCCTCCTCCGCTGCTGCCACGGCCACGAACATAACAAGATCTCCGGAAGCTGAAAGCGAAACACCAATCAAGATCCAACCCATAAAGCCTCTACCTATCAGCAACGGAGTACTCAAGCGCCACCATCACCACCTCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGAATCATCACCACCATGTCATCATACCCTCCGCAACCACCACCACCTACAAAGAGTGTCTCAAAAACCATGCGGCCACCTTAGGAGCTCACGCTCTAGATGGCTGTGGAGAATTCATGCCATCTCCCACCGCCACGCCATCAGATCCCACCTCTCTAAAATGCGCTGCTTGCGGCTGCCACCGCAATTTCCACCGCCGGGAACCTGACCCCACCGCCTTTGCAACTACAGCCACTGCCACCCACGTGATCGAGTACCAACCTCACCACCGCCACCACCCACCGCCTCCACCTCCTCCGCAGCTGAATCGGAGCCCCAATTCAGCTTCCCCACCTCCAATCTCTTCCTCTTACTACCCATCAGCTCCCCACATGCTCTTAGCTCTATCAACCGGTCCTGGAACCGGGCCGAGCCCAATTAACGGGAGCCCGAATGCGAGGAAAAGGTTTAGAACGAAGTTCAGCCAAGAACAGAAAGAGAGGATGCATGAGCTTGCCGAACGAGTTGGATGGAAGATGCAGAAGAGAGATGAAGAGATCGTGCAAGAGTTCTGCCATGAAATCGGAATCGATAAGGGTGTTCTTAAAGTCTGGATGCATAATAACAAGAACACTTTGGGTAAGGTATCGTCGATGAATAACATGAAGGATGTCAATCATCATCATCACCATCATGTTCTAGAACATAACAATAGTTCCCACAACGACGTCATCAACGGCAAAAACGATGCCGTTCAGAATCAAATTATGAATCGTGAGTATGATGATGATGATGATGATGATGATGACGATGAAGATGATTAG 993 50.96 MDITTTATNPSSAAATATNITRSPEAESETPIKIQPIKPLPISNGVLKRHHHHLQQQQQQQQQQNHHHHVIIPSATTTTYKECLKNHAATLGAHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDPTAFATTATATHVIEYQPHHRHHPPPPPPPQLNRSPNSASPPPISSSYYPSAPHMLLALSTGPGTGPSPINGSPNARKRFRTKFSQEQKERMHELAERVGWKMQKRDEEIVQEFCHEIGIDKGVLKVWMHNNKNTLGKVSSMNNMKDVNHHHHHHVLEHNNSSHNDVINGKNDAVQNQIMNREYDDDDDDDDDDEDD 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2443471 2445056 + Conep04aG0056200.1 Cone4ag0542 435520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0542 330 MobiDBLite consensus disorder prediction 156 170 - -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 1 68 - -
Cone4ag0542 330 SUPERFAMILY Homeodomain-like 198 271 IPR009057 -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 316 330 - -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 150 209 - -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 310 330 - -
Cone4ag0542 330 FunFam Zinc-finger homeodomain protein 2 201 271 - -
Cone4ag0542 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 268 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone4ag0542 330 Pfam ZF-HD protein dimerisation region 78 132 IPR006456 -
Cone4ag0542 330 NCBIfam homeobox domain, ZF-HD class 210 267 IPR006455 -
Cone4ag0542 330 Gene3D - 201 271 - -
Cone4ag0542 330 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 131 IPR006456 -
Cone4ag0542 330 MobiDBLite consensus disorder prediction 1 28 - -
Cone4ag0542 330 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 79 131 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0542 Cone-Chr4:2443471 Cone6ag1541 Cone-Chr6:12098444 8.19E-39 dispersed
Cone4ag0542 Cone-Chr4:2443471 Cone4ag0543 Cone-Chr4:2451409 2.43E-16 tandem
Cone16ag0849 Cone-Chr16:9062314 Cone4ag0542 Cone-Chr4:2443471 1.43E-68 wgd
Cone2ag0846 Cone-Chr2:34450051 Cone4ag0542 Cone-Chr4:2443471 5.51E-17 wgd
Cone2ag0193 Cone-Chr2:1019885 Cone4ag0542 Cone-Chr4:2443471 1.68E-79 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone6ag0586 Cone-Chr6:2878195 5.07E-40 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone7ag0516 Cone-Chr7:2383591 1.84E-131 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone9ag0589 Cone-Chr9:2782954 3.55E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45929 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0542 - - - 0.0