Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0556 ATGTGCGTGTGTTTTGTGGAGAAAGAAGGGAAAGTGAGAAAGAGGCTGATGAGATTAACTCTCTCTTCGCCCCCCTTTTTATGGTGTTGGGAACTGGAACGTGGGAAAATTGAAGGAGAAGAAAAAGAAAGAAGAGGAAGCGGCTTAGGGGTTATGGGTAGTTGTATGTCTTCAAGGTCTAAAGAAAGTAAGTCAACAGATGATACGAGCAAGGGCAAGCTGGTTGCTCCAATCACATCTTCTTCAACCACAAGCAATGCAGAAAGTTCTCTTTCAACTAACATTGAGGAGGAGCTAAAAATCTCTTCTCAGCTCAGGAAATTTTTCTTCCATGAGCTAAAGTCTGCAACAAGAAACTTTAGACCTGAGAGCCTTCTGGGCAAAGGTGGGTTCGGGTGTGTCTTTAAGGGCTGGATCAATGAGTCCGGAACTTCTCCTGTCAAACCCGGTGCTGGGCTTGCTGTTGCCGTTAAGACCCTTAATCATGATGGGCTTCAAGGCCACAAAGAATGGCTTGCTGAAGTTAATTATCTTGGACACCTACATCATCCGAACTTAGTTAAGTTAGTTGGTTATTGTATTGAGGATGATCAAAGGCTACTTGTTTATGAATTTATGCCTCGAGGAAGCTTAGAGAATCACCTTTTCAGGGGGACCCTGCCTCTTCCATGGTCCATAAGAATGAAAATTGTGCTCGGTGCTGCTAAGGGTCTTGCGTTTCTTCATGAGGAAGCTGAGAGGCTCGTGATCTATCGCGATTTTAAATCTTCCAATATCTTATTAGATGTGGATTATAATGCAAAGCTTTCTGATTTTGGACTTGCCAAAGATGGACCAGAGGGTGATAAAACTCATGTCTCCACCCGGGTTATGGGAACTTATGGCTATGCTGCCCCTGAATATGTCATGACAGGACATCTTACATTGAAGAGTGACGTCTATAGTTTCGGGGTGGTCCTACTGGAGATGTTAACGGGCCGAAGGTCCATGGACAAGAACCGGCCGAATGGACAACAGAACTTGGTGGAGTGGGCCCGTCCACAACTCAGCGATATGTGGATGTTCTACCGTCTGATTGACCGACGTCTTGAAGGTCACTTCTCTATCAAAGGAGCCCAGAGAGCTTTTCAAATAGCTGCTCATTGCATTAGCCATGACCCAAAAGCCAGACCCTTAATGAGCGAAATTGTACAAGCATTAATGCCTCTTCGGAACCTCAAAGACATGGCTAGCTCTTCTCCCTTCTTCCAAGCCATGCAAGCTGAATGGGTCGGGTTAGTCCCAAATGCAAGGAGTAGTATTAGAATCCGTAAGAGTTATTTGAGAAATGGGCAGATGACGAGGAGCCCTTCTGCTACTAATGGGCTACATGCTTTGCCGTATCATAGAAGGCATCCTCACCCTTCACCCAAACCGAGTTTTGGGCAGTCATAG 1434 45.47 MCVCFVEKEGKVRKRLMRLTLSSPPFLWCWELERGKIEGEEKERRGSGLGVMGSCMSSRSKESKSTDDTSKGKLVAPITSSSTTSNAESSLSTNIEEELKISSQLRKFFFHELKSATRNFRPESLLGKGGFGCVFKGWINESGTSPVKPGAGLAVAVKTLNHDGLQGHKEWLAEVNYLGHLHHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRGTLPLPWSIRMKIVLGAAKGLAFLHEEAERLVIYRDFKSSNILLDVDYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTLKSDVYSFGVVLLEMLTGRRSMDKNRPNGQQNLVEWARPQLSDMWMFYRLIDRRLEGHFSIKGAQRAFQIAAHCISHDPKARPLMSEIVQALMPLRNLKDMASSSPFFQAMQAEWVGLVPNARSSIRIRKSYLRNGQMTRSPSATNGLHALPYHRRHPHPSPKPSFGQS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2508175 2511413 + Conep04aG0057600.1 Cone4ag0556 435534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0556 477 CDD STKc_IRAK 126 403 - -
Cone4ag0556 477 FunFam Probable serine/threonine-protein kinase PBL8 206 420 - -
Cone4ag0556 477 SUPERFAMILY Protein kinase-like (PK-like) 106 423 IPR011009 -
Cone4ag0556 477 MobiDBLite consensus disorder prediction 70 89 - -
Cone4ag0556 477 Gene3D Phosphorylase Kinase; domain 1 100 205 - -
Cone4ag0556 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0556 477 FunFam Serine/threonine-protein kinase BIK1 86 205 - -
Cone4ag0556 477 Gene3D Transferase(Phosphotransferase) domain 1 206 419 - -
Cone4ag0556 477 ProSiteProfiles Protein kinase domain profile. 120 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0556 477 MobiDBLite consensus disorder prediction 443 477 - -
Cone4ag0556 477 Pfam Protein tyrosine and serine/threonine kinase 124 400 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0556 477 ProSitePatterns Protein kinases ATP-binding region signature. 126 158 IPR017441 GO:0005524(InterPro)
Cone4ag0556 477 MobiDBLite consensus disorder prediction 41 89 - -
Cone4ag0556 477 PANTHER OS01G0588500 PROTEIN-RELATED 85 404 IPR050823 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0556 Cone-Chr4:2508175 Cone7ag0532 Cone-Chr7:2475645 5.49E-269 dispersed
Cone16ag0870 Cone-Chr16:9177028 Cone4ag0556 Cone-Chr4:2508175 1.34E-213 wgd
Cone2ag0855 Cone-Chr2:34546743 Cone4ag0556 Cone-Chr4:2508175 1.28E-132 wgd
Cone2ag0176 Cone-Chr2:931601 Cone4ag0556 Cone-Chr4:2508175 1.53E-215 wgd
Cone4ag0556 Cone-Chr4:2508175 Cone6ag0606 Cone-Chr6:2979059 2.36E-139 wgd
Cone4ag0556 Cone-Chr4:2508175 Cone7ag0529 Cone-Chr7:2457001 1.00E-272 wgd
Cone4ag0556 Cone-Chr4:2508175 Cone9ag0611 Cone-Chr9:2891069 3.20E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82739 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0556 - - - 0.0