Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0559 ATGTTTGATAATAGCTTTCGAAATGAAGCAAGGGTTTTGTCAGACATACGACATCGAAACATTGTGAAACTTCATGGATTCTGCTTACACAATCGATGCATGTTCTTGATATACGAATACATGGAAAGAGGAAGCTTGCTTTGGGTACTACGCAACGAAGAAGCAGTGGAGTTGGACTGGAATAAGAGGGTGAACATCATTAAATCCATGGCACGTGCATTGTCTTACATGCATTATGACTGTTTCCCACCTATTGTTCATCGAGACATCACGACAAGTAATATTCTATTGAATTCAGATTTAGATCCATTTCTATCTGACTTTGGAACAGCCAGACTCCTTCAAATCGATGCGTCCAATCAAACAATACGTGCCGGCACTTACGGATATATTGCCCCTGAATTGGCATACACCATGGCGGTAACTGAAAAGTGTGACGTCTACAGTTTTGGAGTGGTGGCATTAGAGATATTGATGGGAAGACATCCTCGTGATCTATTGTCTTCATTTTCATCGTCTTCTACACGAGACTTGGCCATAAATGACTTATTGGACCCTCGCTTTATGCGTCCAACTAGTGGGCAGGCTACAGAAGATGTTGTACTTGTCGCAACAATAGCATTGGCTTGCTTACGCATTGATCCGAAACATCGTCCTTCAATGAAAGATGTGTCTCAAGCATTTGTCGCCAGTGACCAACCGTTGCTGAAGCCTCTTCATGACATCTCATTGGGAAGTCTGTTGAGACAAGAAATATATGTATTGGCCAAAAATGAAATCTAA 783 41.63 MFDNSFRNEARVLSDIRHRNIVKLHGFCLHNRCMFLIYEYMERGSLLWVLRNEEAVELDWNKRVNIIKSMARALSYMHYDCFPPIVHRDITTSNILLNSDLDPFLSDFGTARLLQIDASNQTIRAGTYGYIAPELAYTMAVTEKCDVYSFGVVALEILMGRHPRDLLSSFSSSSTRDLAINDLLDPRFMRPTSGQATEDVVLVATIALACLRIDPKHRPSMKDVSQAFVASDQPLLKPLHDISLGSLLRQEIYVLAKNEI 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2515634 2516484 - Conep04aG0057900.1 Cone4ag0559 435537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0559 260 Gene3D Transferase(Phosphotransferase) domain 1 45 235 - -
Cone4ag0559 260 SUPERFAMILY Protein kinase-like (PK-like) 4 226 IPR011009 -
Cone4ag0559 260 FunFam MDIS1-interacting receptor like kinase 2 41 234 - -
Cone4ag0559 260 Gene3D Phosphorylase Kinase; domain 1 2 44 - -
Cone4ag0559 260 Pfam Protein kinase domain 4 226 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0559 260 PIRSF ILK 2 228 - -
Cone4ag0559 260 ProSitePatterns Tyrosine protein kinases specific active-site signature. 85 97 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0559 260 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0559 260 PANTHER LEUCINE RICH REPEAT KINASE 2 3 230 IPR051420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0559 Cone-Chr4:2515634 Cone7ag0533 Cone-Chr7:2477767 4.23E-162 dispersed
Cone4ag0557 Cone-Chr4:2511745 Cone4ag0559 Cone-Chr4:2515634 4.40E-87 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82741 PF05498 RALF 1.00E-24 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0559 - - - 0.0