Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0586 ATGGAAGCCAGTGCCGGACTAGTAGCCGGGTCTCACAACCGGAACGAGCTGGTTGTCATTCGAGGCCACGAAGAGCATAAGCCATTGAGGAACTTGGATGGTCAAGTCTGTGAGATTTGTGGAGATGAAGTCGGACTTACTGTAGATGGAGACTTGTTCATTGCTTGTAATGAGTGCGGTTTTCCGGTTTGCCGGCCTTGTTATGAGTATGAAAGGCGAGAAGGAAGCCAATTGTGTCCCCAATGCAGAACTCGCTATAAACGTCTCAAAGGGAGTCCGAGGGTGGAGGGGGATGACGATGAAGAGGATGTGGACGATATTGAGCATGAATTTAATATTGAAGATGATAGAAAAAAGCCACATGAACATATTGCAGAAGCAATGCTTCATGGGAAGATGAGTTATGGTAGAGGCCTAGAGGAAGAAGATGCCCAGTTCCCTCATGTTATTTCTGGCGGCCAATCAAGACCGGTGAGTGGGGACTTATCAGCGCATGGTTATGGGGATCATGCTTTATCTTCTTCACTGCAGAAAAGAGTGCATCCTTATCCGACTTCTGAACATGGGAGTGCAAGATGGGATGAAAGGAAAGAGGAAGGCTGGAAAGAGAGAATGGATGATTGGAAACTGCAGCAGGGAAATCTCGGACATGAATTACCTGATCATGACCCTAATGATCCGGACATGGCCATGATTGATGAAGCAAGGCAGCCATTGTCAAGGAAAGTACCTATAGCATCAAGCAAAGTCAATCCTTATAGGATGGTGATTGTGGCTCGGCTTCTTATTCTAGCCTTCTTCCTTCGTTATAGACTTCTAAATCCTGTTCATGACGCCTTTGGGCTCTGGTTAACCTCTGTCATATGCGAAATCTGGTTTGCATTCTCATGGATCCTTGATCAGTTCCCGAAATGGTTCCCTATTGATCGAGAAACCTACTTGGACCGCCTCTCTCTAAGGTATGAAAAAGAGGGCGAACCTAATATGCTTTCTCCAGTGGATGTATTTGTAAGTACTGTGGACCCACTGAAGGAACCTCCGCTTGTTACTGCAAACACGGTCCTTTCGATCTTAGCTGTGGACTACCCAGTTGACAAGGTTTCATGCTACATTTCTGATGATGGAGCTTCCATGCTCACTTTTGAAGCTCTGTCTGAAACTGCAGAGTTTGCTCGTAAATGGGTACCTTTCTGTAAGAAATTTTCCATAGAGCCTAGAGCACCTGAAATGTATTTTACAGAGAAGATTGATTACCTCAAGGATAAAGTCCAGCCTACATTTGTCAAGGAACGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAAGTTAGGATAAATTTGCTTGTTGCAAAAGCTTTGAAAGTTCCTCCGGAAGGTTGGATCATGCAAGACGGGACACCATGGCCAGGAAACAACACAAAGGACCATCCTGGTATGATACAAGTCTTTCTGGGTCATAGTGGAGGCCTTGATACAGATGGAAATGAACTCCCTCGCCTCGTTTATGTTTCTCGTGAGAAAAGGCCCGGTTTCCAACATCACAAAAAAGCTGGTGCCATGAATGCACTGGTTCGTGTTTCGGCGGTGCTTACAAATGCTCCTTTTATGCTGAACTTGGATTGTGATCACTATATAAACAACAGCAAAGCAGTTCGTGAAGCAATGTGTTTTTTGATGGACCCACAAATCGGGAAGAAAGTATGCTATGTTCAATTCCCACAAAGATTTGACGGCATTGATAGGCACGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATCAACATGAAAGGTTTAGACGGGATTCAAGGGCCTGTCTATGTCGGGACAGGTTGTGTTTTCAGGAGACAAGCTTTATATGGTCAGGAACCCCCTAAGAGGCCAAAGCGCCCGAAAATGGTAAGCTGTGACTGCTGCCCATGTTTCGGAAGGCGGAAAAAGCTTCAGAAGTATTCTAAGCATGGCACAGAAGGAGCTGCTTTGGGTCTTCAAGGAATGGAAGGTGACAAAGAGGTTTTGATGTCTGAAATGAATTTTGAAAAGAAATTTGGACAGTCTTCGATTTTCGTTACCTCAACTTTGATGGAACATGGTGGGGTCCCTCCTTCCTCTAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTAATCAGTTGCGGTTATGAAGACAAAACCGAATGGGGTGTAGAGCTTGGTTGGATATATGGTTCAATCACTGAAGATATTCTAACGGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCAATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACGGCTCCAATCAACTTGTCAGATAGGCTCAACCAAGTGCTTAGGTGGGCCCTTGGGTCGATTGAGATCTTTTTCAGTAACCACTCTCCTCTTTGGTATGGCTACAAGGGAGGGAACCTGAAATGGCTTGAGCGATTTGCATATGCTAACACAACTATCTACCCCTTCACTTCACTCCCTCTCCTTGCCTACTGTACCCTCCCTGCCATTTGCCTTCTCACAGATAAATTCATTATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATCGCTCTGTTTCTTTCAATCTTTGCAACTGGAATTCTCGAGCTTAGATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAACGAGCAATTCTGGGTGATAGGTGGTGTTTCGGCTCATCTGTTTGCTGTTGTACAAGGACTTTTGAAGGTTTTGGCTGGAATTGATACTAATTTCACTGTTACATCAAAAGCAACAGATGATGAGGATTTTGGAGAATTATATGCCTTTAAGTGGACAACTTTGTTGATTCCTCCGACTACAATATTAATCATCAATCTTGTTGGAGTTGTTGCCGGGATTTCGGATGCTATAAACAACGGCTATCAGTCATGGGGCCCACTATTTGGGAAGCTCTTCTTTTCATTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTTTAATGGGAAGGCAAAACCGGACACCCACTATAGTTGTGATATGGTCCGTTCTCTTGGCTTCAATCTTCTCCTTGCTCTGGGTCCGGATTGACCCATTTGTGATGAAAACCAAGGGGCCAGATGTTAAGCAATGCGGACTCAATTGCTGA 3129 44.61 MEASAGLVAGSHNRNELVVIRGHEEHKPLRNLDGQVCEICGDEVGLTVDGDLFIACNECGFPVCRPCYEYERREGSQLCPQCRTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDDRKKPHEHIAEAMLHGKMSYGRGLEEEDAQFPHVISGGQSRPVSGDLSAHGYGDHALSSSLQKRVHPYPTSEHGSARWDERKEEGWKERMDDWKLQQGNLGHELPDHDPNDPDMAMIDEARQPLSRKVPIASSKVNPYRMVIVARLLILAFFLRYRLLNPVHDAFGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEKEGEPNMLSPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYISDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFTEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINLLVAKALKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGQEPPKRPKRPKMVSCDCCPCFGRRKKLQKYSKHGTEGAALGLQGMEGDKEVLMSEMNFEKKFGQSSIFVTSTLMEHGGVPPSSSPAALLKEAIHVISCGYEDKTEWGVELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHSPLWYGYKGGNLKWLERFAYANTTIYPFTSLPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDVKQCGLNC 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2691877 2696197 + Conep04aG0060600.1 Cone4ag0586 435564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0586 1042 CDD mRING-HC-C4C4_CesA 35 85 - -
Cone4ag0586 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Cone4ag0586 1042 FunFam Cellulose synthase 450 624 - -
Cone4ag0586 1042 Pfam Cellulose synthase 333 1036 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone4ag0586 1042 SUPERFAMILY RING/U-box 22 107 - -
Cone4ag0586 1042 FunFam Cellulose synthase 19 110 - -
Cone4ag0586 1042 MobiDBLite consensus disorder prediction 151 197 - -
Cone4ag0586 1042 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 463 623 IPR029044 -
Cone4ag0586 1042 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cone4ag0586 1042 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 239 1011 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone4ag0586 1042 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Cone4ag0586 1042 SUPERFAMILY Nucleotide-diphospho-sugar transferases 347 866 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0586 Cone-Chr4:2691877 Cone4ag1800 Cone-Chr4:13064719 0 dispersed
Cone4ag0586 Cone-Chr4:2691877 Cone7ag0557 Cone-Chr7:2678513 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0586 K10999 - vvi:100248512 1925.6