Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0588 ATGCAGCAGGGTGATCAGACGGTGCTTAGCTTGAGACCTGGTGGCCGTGGTGGCAGACTTCTTGGTCCTCGCTTCGACTCCTCTTCTTCTTCTTCTTCTGCTTCGGCATCCTCCTATGCTTTTGGTTCTGTTTCATCGGATCTCTCTCTGCTACGTCGCCATGGCGGCGCTCCTCATTCTTTCCCCTTAAAGACAGGAGACTCCCGATTTGATGGTCATGAACTCGTGCGCTACACAAAGGATGAGCTACTACGGCTCAGGGAGGCTTCTGAAGTTCCAGATGCTATCCGAGAAATTAAACGAGACATTGAAGCCGAGCTTGTTGGTGAGGACCAAAACTGGGGGCGCATGGAAAGTAATCCCCCAGTTCAATCCCAAAATCGTTATTCTGAGCCAGATGACCGTGACTGGCATGGCCGATCTGCACAATTTTCTACCCCTGGAGATCAGAGATCTTGGGATACTATCCGCGATAGAGAATCAGGTGGTCGGTTTGACTCAAGACAGTCAGAGGCAAGTCAATTTGCGAGGCCACATATCTCTTCGAACCAAGGGGGAGGACCTGCTCCTGCTTTAGTCAAGGCTGAGACACCATGGTCAGCAAGGAGGGGAACTCTCTCTGAAAAGGACCGTGTTCTGAAGACTGTAAAAGGGATACTGAACAAGTTGACACCAGAGAAATTTGATCTTCTCAAGGGTCAGCTAATAGACTCTGGCATTACCTCGGCTGATATTCTAAAGGGGGTCATTTCACTGATTTTTGACAAGGCAGTGCTTGAGCCCACATTTTGCCCCATGTATGCTCTTCTGTGTTTTGATCTCAATGTAAAGCTGCTTCCTTTTCCAGCCGAAGAACCAGGTGGAAAAGAAATAACTTTTAAGCGAGTCCTCTTAAACATCTGTCAGGAGGCTTTTGAAGGTTCTGGAAAACTGAGGGACGAAGTGAGACTGATGACCGCCCCAGAACAAGAGATGGAGCGTCGGGACAAGGAAAGACTAATCAAGCTCCGTACCCTTGGAAATATCCGACTAATCGGGGAACTCTTGAAACAGAAAATGGTGCCTGAGAAGATTGTCCATCACATTGTTCAGGAGCTTCTAGGACCTGATGATAAAAGCTGTCCAGCTGAAGAGAATGTAGAGGCCATTTGTCAGTTCTTTAACACTATTGGAAAGCAACTTGAGGAGCTCGTAAAATCACGCCGAAACAATGATATGTACTTTAGTCGGTTGAAGGAGCTGTCCAAAAACCCTCAATTAGCTCCACGACTGAGGTTCATGGTCCGTGATGTTATTGATTTACGCTCCAACAATTGGGTTCCTAGACGTGAAGAGATGAAGGCCAAAACTATTAGTGAAATCCATTCGGAGGCAGAAAAGAATCTTGGACTCCGCCCTGGTGCTACTGCAAGTATCAGAAACAACCATGGCTCCACGCCTGGTTCTCCTGGAAATTCTAGCCTTGGTGCCTTTCCCATCAATCGACCTGGATCAGGAGGAATGATGCCCGGAATGCCTGGAACCAGGAAGATGCCCGGGACACCCGGGGTGGATAATGACAATTGGGAGGTACCCAGGATGCGATCAATGCCAAGAGGCAATGGGTCTGGGCGGGCCCAAGTGTTCAATAAATCATCATCACTGAACACAAGGTTACTACCTCAGGGCAGTGGTGTTGGTCTTGTTGCGAAACCTTCTGCCCTTTTGCAAGGGGCCAGTCCATCTCCTACTCGGCTTGAGCCATCTGCTGAAGTCCCTAAATTTGTTCAGGCTCCAGCTTTTGAAAGGCCACAGGTCCCAGTTTCTAAGTCAAATCCAGACGATCTTAAGAGGAAAACTGAATCCCTTCTAGAAGAATACTTCAGTGTTCGGCTTTTAGACGAAGCTCTACAGTGTGTGGAGGAACTAAGGTCACCAGCTTACAACCCTGAGGTTGTAAAGGAGGCTATTTATCTAGGACTGGATAAAAGTCCTCCCTGTGTTGAAGCAGTGGCAAAGCTTCTAGAATATCTGCTTGCTAAGAAAGTTATTACGGCTAGAGATATAGAAACCGGGTTCTTTTCGTATGCTTCTATGCTGGATGATGTGGGTATTGATCAACCAAAAGCACCGAGTAATTTCGGTGAAATTCTTGGGAAACTGATTATATCAGGGGGATTGGAGTTTAAGTTGGTGAAAGAGGTGCTGAAAAAAGTGAAAGATGATTGGTTCCGGAAAGCTGTATTCGATGCAGTGGTGGGATCTATCACTTCTAGTTTGTCCGGACAAGGCGTGTTGGATTCACATGCATCAGAGGTTGAGGCTTGTCAGAATCTGTTACAGTAG 2325 47.31 MQQGDQTVLSLRPGGRGGRLLGPRFDSSSSSSSASASSYAFGSVSSDLSLLRRHGGAPHSFPLKTGDSRFDGHELVRYTKDELLRLREASEVPDAIREIKRDIEAELVGEDQNWGRMESNPPVQSQNRYSEPDDRDWHGRSAQFSTPGDQRSWDTIRDRESGGRFDSRQSEASQFARPHISSNQGGGPAPALVKAETPWSARRGTLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYALLCFDLNVKLLPFPAEEPGGKEITFKRVLLNICQEAFEGSGKLRDEVRLMTAPEQEMERRDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDDKSCPAEENVEAICQFFNTIGKQLEELVKSRRNNDMYFSRLKELSKNPQLAPRLRFMVRDVIDLRSNNWVPRREEMKAKTISEIHSEAEKNLGLRPGATASIRNNHGSTPGSPGNSSLGAFPINRPGSGGMMPGMPGTRKMPGTPGVDNDNWEVPRMRSMPRGNGSGRAQVFNKSSSLNTRLLPQGSGVGLVAKPSALLQGASPSPTRLEPSAEVPKFVQAPAFERPQVPVSKSNPDDLKRKTESLLEEYFSVRLLDEALQCVEELRSPAYNPEVVKEAIYLGLDKSPPCVEAVAKLLEYLLAKKVITARDIETGFFSYASMLDDVGIDQPKAPSNFGEILGKLIISGGLEFKLVKEVLKKVKDDWFRKAVFDAVVGSITSSLSGQGVLDSHASEVEACQNLLQ 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2701407 2705961 + Conep04aG0060800.1 Cone4ag0588 435566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0588 774 MobiDBLite consensus disorder prediction 471 488 - -
Cone4ag0588 774 MobiDBLite consensus disorder prediction 152 166 - -
Cone4ag0588 774 Pfam MIF4G domain 213 438 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone4ag0588 774 MobiDBLite consensus disorder prediction 1 38 - -
Cone4ag0588 774 ProSiteProfiles MI domain profile. 608 730 IPR003891 -
Cone4ag0588 774 MobiDBLite consensus disorder prediction 112 192 - -
Cone4ag0588 774 SMART ma3_7 609 721 IPR003891 -
Cone4ag0588 774 Pfam MA3 domain 609 720 IPR003891 -
Cone4ag0588 774 Gene3D - 602 770 - -
Cone4ag0588 774 MobiDBLite consensus disorder prediction 464 488 - -
Cone4ag0588 774 FunFam Eukaryotic translation initiation factor isoform 4G-2 204 439 - -
Cone4ag0588 774 SUPERFAMILY ARM repeat 604 763 IPR016024 -
Cone4ag0588 774 SUPERFAMILY ARM repeat 206 441 IPR016024 -
Cone4ag0588 774 SMART if4_15 213 438 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone4ag0588 774 Gene3D - 204 439 - -
Cone4ag0588 774 MobiDBLite consensus disorder prediction 167 181 - -
Cone4ag0588 774 MobiDBLite consensus disorder prediction 24 38 - -
Cone4ag0588 774 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 57 772 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0263 Cone-Chr14:1205901 Cone4ag0588 Cone-Chr4:2701407 4.14E-51 dispersed
Cone15ag0282 Cone-Chr15:1314016 Cone4ag0588 Cone-Chr4:2701407 3.15E-47 dispersed
Cone4ag0439 Cone-Chr4:1963385 Cone4ag0588 Cone-Chr4:2701407 8.58E-36 dispersed
Cone4ag0588 Cone-Chr4:2701407 Cone7ag0426 Cone-Chr7:1891171 2.38E-51 dispersed
Cone17ag0976 Cone-Chr17:7547006 Cone4ag0588 Cone-Chr4:2701407 9.50e-313 wgd
Cone2ag0587 Cone-Chr2:3423742 Cone4ag0588 Cone-Chr4:2701407 1.61E-98 wgd
Cone20ag0318 Cone-Chr20:1410362 Cone4ag0588 Cone-Chr4:2701407 3.25e-318 wgd
Cone4ag0588 Cone-Chr4:2701407 Cone7ag0559 Cone-Chr7:2686118 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0588 K03260 - rcu:8278108 1032.71