Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0599 | ATGGCCGAGCACGAGAACGGCGAGGCTCACGAGGCGGAAAACTCAAAGCTAGACGAAGAACAGGAAGAAGGGGACGAAGGAGATGGAGGAGGAGGAGCATCGGAGGGAGAATTAGGGGGACAGGTCGGCGAGTCGCGTCCGGTGGAGGTAGAGAGCTTTGTGGGAGCTGGTGAAGCGAAAGTAAAAGATTCCGATTTGGAAACCCTAGGGCGACCTTCTGCTCTTCAATCATCTTCGTTGAACGGTCAATCTGAAGGTTTGCTGGAGATTTCTGCGTCGCAGTCGTCAGGAGTTCCTGGAGTCAAGGATCAAGCTGGGGTTTCTCATGACGGAGTTCCAGTTTGTGCAACATCTCAGGCAGCTCGAGCTCAGACTGAAAGTCAACTGCAGTTGTCAACATGTGTAACACCTCCATCACAACAATCACCTACTTCAGTTACGCAGTCTATCTCATCTGCCCCAAGCCCAACTCTATTAGAACAAAGAAAATTGCCACCCTTAAAGATCATTAAGGAATGCAAGCCCGAGCCAAACCCACTAAAATCTTCTAAAACCGCACCTTCTCTTCCCACAGTAAGGACGCCTAGTTCTGATGGGTACAACTGGAGGAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAAGGGTCTCGTAGCTATTACAGATGCACACATGCAGAATGCTGTTCTAAGAAGATTGAATGCTGTGATCACTCAGGCCATGTTACAGAGATTGTTTACAAGAGTCAGCACAGCCATGATCCTCCTAGGAAGATTAACAGTACAAGGGAAAGCAAGGCCGTTTCATCTGCTGAACCTGTTGTTAGGAACATTATTACAGAATGCTCCAATAGGATAATTAATGATTCGGATCCGTCCACATCTTCAAAAGAACATGTACAAGATACAACTTCAGTTCCTGAAAGAAAGCGGCAGTACCCTAGTGACTTGGTCAAAAAGGTTGAGAACATAGTCAAAGAGGAGAATGCCAGTGAACCTGAACCGAAACGGAGGCAAAAGAAAAGCAATGTAGAGTGTCCAGATTCTGTTGTAAAAGTTGGCAAGAAACCTAAATTTGTAGTGCATGCAGCTGGTGATGTGGGGATATCTAGTGATGGATACAGATGGCGCAAATATGGACAGAAAATGGTGAAGGGTAATAGTCACCCCAGAAACTACTACAGATGCACATCTGCGGGATGTCCTGTTCGTAAACATATTGAGACAGCCGTAGATAATCCGAATGCCGTAATTATAACATACAAGGGAATACATGACCACGACAAGCCAGTACCAAAGAAAAGACATGGCCCACCAAGTGTTTCTCTTGTTGCTGTTGCTGCTCCAAAATCCATGAACAATATACAGATGAAGAAAACTGACACTGCCTCAACACAGTGGTCGGTTGACCCAGAAGGAGAGTTAACCGGAGAGGCCTTGGACCTTGGAGGTGAGAAGGCAATGGAATCAGCCAGAACACTTTTAAGCATTGGATTTGAAATCAAGCCGTGCTGA | 1512 | 46.16 | MAEHENGEAHEAENSKLDEEQEEGDEGDGGGGASEGELGGQVGESRPVEVESFVGAGEAKVKDSDLETLGRPSALQSSSLNGQSEGLLEISASQSSGVPGVKDQAGVSHDGVPVCATSQAARAQTESQLQLSTCVTPPSQQSPTSVTQSISSAPSPTLLEQRKLPPLKIIKECKPEPNPLKSSKTAPSLPTVRTPSSDGYNWRKYGQKQVKSPKGSRSYYRCTHAECCSKKIECCDHSGHVTEIVYKSQHSHDPPRKINSTRESKAVSSAEPVVRNIITECSNRIINDSDPSTSSKEHVQDTTSVPERKRQYPSDLVKKVENIVKEENASEPEPKRRQKKSNVECPDSVVKVGKKPKFVVHAAGDVGISSDGYRWRKYGQKMVKGNSHPRNYYRCTSAGCPVRKHIETAVDNPNAVIITYKGIHDHDKPVPKKRHGPPSVSLVAVAAPKSMNNIQMKKTDTASTQWSVDPEGELTGEALDLGGEKAMESARTLLSIGFEIKPC | 503 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2739002 | 2742030 | - | Conep04aG0061900.1 | Cone4ag0599 | 435577 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 284 | 300 | - | - | |
| Cone4ag0599 | 503 | FunFam | WRKY transcription factor | 355 | 430 | - | - | |
| Cone4ag0599 | 503 | ProSiteProfiles | WRKY domain profile. | 197 | 255 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 247 | 270 | - | - | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 181 | 203 | - | - | |
| Cone4ag0599 | 503 | SUPERFAMILY | WRKY DNA-binding domain | 194 | 255 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 70 | 101 | - | - | |
| Cone4ag0599 | 503 | Pfam | WRKY DNA -binding domain | 371 | 427 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | Pfam | WRKY DNA -binding domain | 198 | 253 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 311 | 344 | - | - | |
| Cone4ag0599 | 503 | ProSiteProfiles | WRKY domain profile. | 364 | 429 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 104 | 436 | IPR044810 | GO:0003700(InterPro) | |
| Cone4ag0599 | 503 | SMART | WRKY_cls | 196 | 254 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | SMART | WRKY_cls | 369 | 428 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Cone4ag0599 | 503 | SUPERFAMILY | WRKY DNA-binding domain | 365 | 429 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 284 | 345 | - | - | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 118 | 215 | - | - | |
| Cone4ag0599 | 503 | Gene3D | WRKY domain | 354 | 430 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | Gene3D | WRKY domain | 185 | 256 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cone4ag0599 | 503 | MobiDBLite | consensus disorder prediction | 118 | 158 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag0599 | Cone-Chr4:2739002 | Cone7ag0493 | Cone-Chr7:2269946 | 1.95E-44 | dispersed | |
| Cone16ag0479 | Cone-Chr16:6955697 | Cone4ag0599 | Cone-Chr4:2739002 | 2.47E-44 | wgd | |
| Cone2ag0536 | Cone-Chr2:2960579 | Cone4ag0599 | Cone-Chr4:2739002 | 1.62E-45 | wgd | |
| Cone4ag0599 | Cone-Chr4:2739002 | Cone4ag1749 | Cone-Chr4:12857921 | 4.79E-09 | wgd | |
| Cone4ag0599 | Cone-Chr4:2739002 | Cone7ag0569 | Cone-Chr7:2732336 | 0.00E+00 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45935 | PF07714 | PK_Tyr_Ser-Thr | 1.80E-25 | CL0016 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0599 | - | - | - | 0.0 |