Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0600 ATGTCGGACGAAGAGCACCACTTCGAATCTAAAGCCGACGCCGGAGCGTCCAAGACTTATCCTCAACAAGCTGGAACCATCCGTAAAAATGGCTATATCGTCATTAAGAATCGACCTTGCAAGGTTGTGGAAGTTTCAACTTCAAAAACCGGCAAGCATGGACACGCAAAGTGTCACTTTGTGGGAATTGATATCTTCAATGGGAAGAAGCTCGAAGATATTGTCCCTTCTTCCCACAACTGTGATGTTCCTCATGTTAATCGTACTGATTATCAGTTGATCGATATATCTGAAGATGGTTTTGTCAGTCTTCTTACTGAAAATGGAAACACTAAGGATGATCTGAGGCTTCCTACTGACGACACTCTCCTTACCCAGATCAAAGACGGGTTTGGAGATGGAAAGGACCTCGTGGTGACTGTTATGTCAGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAGAACTAA 483 44.51 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLTQIKDGFGDGKDLVVTVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2744791 2747358 - Conep04aG0062000.1 Cone4ag0600 435578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0600 160 MobiDBLite consensus disorder prediction 1 21 - -
Cone4ag0600 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cone4ag0600 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cone4ag0600 160 Gene3D - 1 85 IPR014722 -
Cone4ag0600 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone4ag0600 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone4ag0600 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone4ag0600 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone4ag0600 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Cone4ag0600 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Cone4ag0600 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone4ag0600 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Cone4ag0600 160 Gene3D - 86 159 IPR012340 -
Cone4ag0600 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone4ag0600 160 CDD S1_eIF5A 86 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0191 Cone-Chr16:1246812 Cone4ag0600 Cone-Chr4:2744791 8.04E-107 dispersed
Cone2ag0825 Cone-Chr2:34254365 Cone4ag0600 Cone-Chr4:2744791 1.39E-107 dispersed
Cone17ag0983 Cone-Chr17:7574352 Cone4ag0600 Cone-Chr4:2744791 2.31E-106 wgd
Cone20ag0323 Cone-Chr20:1432030 Cone4ag0600 Cone-Chr4:2744791 1.45E-109 wgd
Cone4ag0600 Cone-Chr4:2744791 Cone7ag0570 Cone-Chr7:2736971 4.87E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0600 K03263 - vvi:100267006 313.923