Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0604 ATGCAGCCAAGCAGTAGCAGAGAAATGCAAGGAATTAACCCCGTTTTAAACCAGTCTCAGATGTCCCTTCAGGACCTTCATCATCAAAATCAAAATCAAATCCAGTCTTCCTCTCACGATGATTTTCTCGAGCAAATGCTTTCTACCATCAACACTTCCTGTTCATGGCCAGTTCTCAAATCTCCATGGGACCTCAACCCTTCGAATCCGACCTCCATCAACGGCCACAGCAAGCACGCAGCACCAGACCTTTCCTCCGATGAAATGCCGGCATCTGACCATGAAAATGCTCCATTCCCGTTCGACGAGCCTAACAATAGCCTCGCTTTGAAGCTCCGTGGCCAACAGATCAGCGGCAGCGGCACCAACTCCCCGGCGATGAAGGCTGCAGCGGCGATGATGCTTCATCAGCAGCTGCTAATGTCAAGTGGAGGAATCTCCGGCGAATCCGGTCTTCTTCCTCCTATGCCTATGTATTTGAATGGCGGCGATATGGAGCTCTCTCAGAACGACGTCGTAGATGGATCGTCTTCTTTCAAATCTCCCACTCAGGGAGGTGCGATGCAGGGACCGAACTTTGGGGCTACAGGACCGGCAGCGAACCAAGGTCCGGTAAGCGGTTCAGCTGGAGGTGCACAGGGTCAGCCGAAACAGAGGGTCAGGGCTCGTAGAGGTCAAGCCACCGATCCACACAGTATTGCCGAAAGATTAAGGAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAGGAGCTTGTTCCCAATGCGAATAAGACAGACAAAGCATCGATGCTTGATGAGATCATAGACTATGTTAAATTCCTCCAGCTTCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGTGGTGCAGCTGCTGTTGCTCCTCTTGTTGCTGATATGTCCTCTGAGGGAGGTGGGGACTGTGTCCAATCCAGTGGGAACACCAACGGTGGCGGGGTCCTCACTCGTGGTGGCGCTGGCGGAGTAGGAGGATTTAACCCAGCTTCCCAGGCGGGCACCACCGATCAGAGCATGACTGTGACGGAGCACCAAGTGGCGAAGCTCATGGAGGAGGACATGGGGTCGGCCATGCAGTACCTCCAAGGGAAAGGTCTCTGCCTCATGCCCATCTCTCTGGCCACTGCCATCTCAACCGCCACGTGTAATTCTAGGAACCCCACGATCGGTCATCAGAGTAACCACCCACTCAATATCCACCAGTCCAACGGTGCTGCTGCTGGTCATCAAGATGGGCCCCCCTCACCAAGCTTGTCCATCTTGACCGTTCAGTCCGCCACTGTCGGCAATTGCTGCGCTGCTGATGCTTCCGGTAAAGACAATGCTTCCAATTCCAAGTCGTGA 1362 53.45 MQPSSSREMQGINPVLNQSQMSLQDLHHQNQNQIQSSSHDDFLEQMLSTINTSCSWPVLKSPWDLNPSNPTSINGHSKHAAPDLSSDEMPASDHENAPFPFDEPNNSLALKLRGQQISGSGTNSPAMKAAAAMMLHQQLLMSSGGISGESGLLPPMPMYLNGGDMELSQNDVVDGSSSFKSPTQGGAMQGPNFGATGPAANQGPVSGSAGGAQGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCVQSSGNTNGGGVLTRGGAGGVGGFNPASQAGTTDQSMTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCNSRNPTIGHQSNHPLNIHQSNGAAAGHQDGPPSPSLSILTVQSATVGNCCAADASGKDNASNSKS 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2769142 2771597 - Conep04aG0062400.1 Cone4ag0604 435582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0604 453 MobiDBLite consensus disorder prediction 393 425 - -
Cone4ag0604 453 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 382 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone4ag0604 453 MobiDBLite consensus disorder prediction 173 213 - -
Cone4ag0604 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 286 IPR036638 GO:0046983(InterPro)
Cone4ag0604 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983(InterPro)
Cone4ag0604 453 FunFam Transcription factor bHLH66 223 288 - -
Cone4ag0604 453 MobiDBLite consensus disorder prediction 173 230 - -
Cone4ag0604 453 MobiDBLite consensus disorder prediction 393 411 - -
Cone4ag0604 453 SMART finulus 232 281 IPR011598 GO:0046983(InterPro)
Cone4ag0604 453 Gene3D - 221 283 IPR036638 GO:0046983(InterPro)
Cone4ag0604 453 MobiDBLite consensus disorder prediction 67 95 - -
Cone4ag0604 453 Pfam Helix-loop-helix DNA-binding domain 231 276 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1048 Cone-Chr12:8728788 Cone4ag0604 Cone-Chr4:2769142 5.04E-16 dispersed
Cone4ag0604 Cone-Chr4:2769142 Cone5ag0543 Cone-Chr5:2302543 6.95E-49 dispersed
Cone16ag0423 Cone-Chr16:6617797 Cone4ag0604 Cone-Chr4:2769142 1.38E-87 wgd
Cone2ag0572 Cone-Chr2:3296185 Cone4ag0604 Cone-Chr4:2769142 2.36E-94 wgd
Cone4ag0604 Cone-Chr4:2769142 Cone7ag0587 Cone-Chr7:2818945 4.76E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45936 PF13041 PPR_2 2.00E-08 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0604 - - - 0.0