Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0605 ATGGCTGGGAGTGGTGTTTTTGCAGAGATATTGGATGGAGATGTGTACAAGTACTATTCTGAAGGAGAATGGAGGAAATCTTCTTCTGGAAAAAGTGTTCCTATCATCAATCCTACAACCAGAAAGGCTCAGTACAAAGTTCAAGCATGTACTCAAGAAGAGGTGAACAAGGTTATGGAAACTGCAAAAATTGCTCAGAAATCATGGGCAAAGACTCCGCTATGGAAGCGAGCTGAGCTTCTTCACAAGGCTGCTGCCATCCTTAAAGAGCACAAAGCCCCTATTGCTGAATGCCTTGTCAAAGAAATTGCCAAACCGGCTAAAGATGCAGTCACTGAGGTTGTAAGGTCTGGGGACCTAATATCTTACTGCGCTGAAGAGGGTGTTCGGATTTTAGGTGAGGGAAAGTTCTTAGTATCCGATAGTTTTCCCGGAAATCAAAGGACTAAGTACTGCCTCACTTCAAAGATTCCACTTGGCGTCGTTTTAGCTATTCCGCCATTCAACTATCCAGTCAACCTAGCCGTCTCGAAAATCGCTCCGGCTCTAATTGCCGGAAACTCTATTGTCCTCAAGCCACCTACTCAGGGAGCTGTTGCTGCTCTTCATATGGTTTATTGCTTCCACTTGGCCGGTTTTCCGAAAGGGCTAATTAGTTGTGTTACAGGAAAAGGTTCCGAGATTGGTGACTTCCTTACTATGCATCCTGGGGTGAATTGCATAAGCTTCACTGGAGGAGACACGGGTATTTCGATATCGAAGAAGGCTGGCATGGTGCCACTTCAGATGGAGTTGGGAGGTAAAGATGCTTGCATCGTTCTCGAGGATGCTGACCTCGACTTAGTTGCCGCAAACATCATTAAAGGAGGCTTTTCTTACAGTGGTCAAAGGTGCACTGCTGTTAAGGTTGTCTTGGTGATAGAATCTGTTGCTGATGCCTTGGTTGAGAAAGTGAATGTGAAGGTCGCTAAGTTGACCGTGGGCCCCCCGGAAGATGACTCAGACATCACTCCGGTTGTGACCGAATCGTCTGCAAATTACATAGAAGGACTTGTGAAGGATGCAAAGGAGAAAGGAGCAACATTTTGCCAAGAGTACAAGAGGGAGGGAAATCTTATTTGGCCCTTGTTGCTTGACAATGTCCGGCCCGATATGAGGATTGCTTGGGAGGAACCCTTTGGACCGGTTTTGCCGGTTATTAGGATTAATTCGATTGAAGAAGGTATCCACCATTGCAATGCAAGCAATTTTGGACTCCAGGGATGTGTCTTCACAAAAGACATAAACAAAGCTATATTGATTAGTGATTCAATGGAGACCGGAACAGTTCAAATAAACTCAGCGCCGGCTAGAGGCCCGGATCACTTTCCGTTTCAGGGTATTAGGGACAGTGGAATTGGATCACAAGGAATTACTAACAGCATCAACATGATGACTAAGGTGAAGAGCACTGTTATCAACTTACCAACCCCTTCTTACACAATGGGCTAG 1491 45.54 MAGSGVFAEILDGDVYKYYSEGEWRKSSSGKSVPIINPTTRKAQYKVQACTQEEVNKVMETAKIAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNQRTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVYCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGISISKKAGMVPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVIESVADALVEKVNVKVAKLTVGPPEDDSDITPVVTESSANYIEGLVKDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSIEEGIHHCNASNFGLQGCVFTKDINKAILISDSMETGTVQINSAPARGPDHFPFQGIRDSGIGSQGITNSINMMTKVKSTVINLPTPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2773319 2775931 - Conep04aG0062500.1 Cone4ag0605 435583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0605 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Cone4ag0605 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Cone4ag0605 496 SUPERFAMILY ALDH-like 16 487 IPR016161 GO:0016491(InterPro)
Cone4ag0605 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Cone4ag0605 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
Cone4ag0605 496 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Cone4ag0605 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Cone4ag0605 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Cone4ag0605 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Cone4ag0605 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0605 Cone-Chr4:2773319 Cone7ag1521 Cone-Chr7:10561375 8.56E-28 dispersed
Cone17ag0988 Cone-Chr17:7626324 Cone4ag0605 Cone-Chr4:2773319 0 wgd
Cone4ag0605 Cone-Chr4:2773319 Cone7ag0586 Cone-Chr7:2816363 6.53E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0605 K00131 - csv:101208699 944.11