Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0611 ATGACTGTGATGGGTCAAAGGGGGGGCGGTGGCATGGTGACTGGAGACGGCGGAGTTGATCGGTTTCCGGTAGGTATGCGCGTCCTTGCGGTGGATGACGACCCTACCTGCCTTAAAATCCTTGAAACACTGCTTCGCAAATGCCATTACTACGTTGAGACAACAAATCAGGCAATTGAAGCCTTAAGAATGTTAAGGGAAAACAGAAACAAGTTTGATTTAGTAATTAGTGATGTAAACATGCCGGACATGGATGGTTTTAAGCTCCTTGAGCTACTAGGACTCGAAATGGACCTTCCAGTTATAATGTTATCGGCCCATAGCGATACGAAGCTTGTGATGAAGGGAATTACACATGGGGCATGTGACTATTTGTTGAAACCGGTCAGGATAGAGGAGCTTAAGAACATATGGCAGCATGTGGTTCGCAGAAAGAAGGTGGATCCCATGGATCAAAACAAGGCTGTCGGGAATGGAAATGGTGAAGGTGGTGATGAACATGGTTTCTCAACGGGAGGTGGTTATAAAGTAATTTGTAGGAAAAGGAAGGATAAAAATGAAGATGAGGAGGAAGAGGGCGAAGAAGAGAGTAGTGATCATGAGAATGACGATCCATCTACTCAGAAGAAAATGAGGGTAGTTTGGTCTATTGAGTTGCATAGGAAGTTTGTTGCAGCAGTTGATCAATTAGGCCTTGAAAGGGCGGTTCCGAAGAAAATCCTAGATGCTATGAATGTGGAGGGACTTACTAGAGAAAATGTAGCAAGCCATTTGCAGAAATATAGGCTATACCTAAAGAGAATAAGAGAAACTCAGCAAGCAAACATGGTTGCAGCATTTAACAGTAGAGATGCCTCTTACATCCGCATAGGTTCATTCAATGGGTTCAGAGATTTACATACATTAGGAGGTTCGGGCTGGCCTTCAAACAACACTTTGGTATCATCATATTCACCAAGTGGAATCCTCGGTAGATCCAACTCTGTTGTTGGACTGGGTCTGCGTGGACTCCAATCTTCGGGATTGATCCAACGGAATTCAGCCCAAAATCTAAACAACACGATCAGTACTCTCCAAACCGGAAGTCTATTACAAACAATTCCCACATCATTAGATTTTGCTCAGTTACAACAGACCAACTCAGCTGAGCTGAATCCCGGTAATAATGATTTATCAGGTGGGCCCACTAGCTTCGTGAATAATGTTTTTGGTGGTTGTGCAATGAATTCCCAAACACAACGAATGTATGAATTGCATGGTAGTAGGCAAGTTGACATCAGCATAAGCGGTTGTAATAACCTTTTGGGTAGTTATGAATACCCTGAAAATTGGCAGGGGTCGAATCCATTGGTATTGAGTGATAGTAATGCTCCTAATCGAGATTTATTACTCGATAAAGTTATTCAATCTACTACAAATAATATGACGCCTAGGCAAAGGTGGGAAGACCATAGTAGTGTTAGTGCCATAAATTCTCTTTCTCCCGCCAATGAGGTTATACGCCGGCATGTTAACCAATTAAATGGATCCGAATTCGTTCAGCCAAATACGGTCGAGAAACATACCTTTGATATGCAAGATGGATACCTTCAGAGCAGTTTCGGGTCCTTGGATGACATAATCAATACCATGGACAAACCGTGA 1644 42.88 MTVMGQRGGGGMVTGDGGVDRFPVGMRVLAVDDDPTCLKILETLLRKCHYYVETTNQAIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELLGLEMDLPVIMLSAHSDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKVDPMDQNKAVGNGNGEGGDEHGFSTGGGYKVICRKRKDKNEDEEEEGEEESSDHENDDPSTQKKMRVVWSIELHRKFVAAVDQLGLERAVPKKILDAMNVEGLTRENVASHLQKYRLYLKRIRETQQANMVAAFNSRDASYIRIGSFNGFRDLHTLGGSGWPSNNTLVSSYSPSGILGRSNSVVGLGLRGLQSSGLIQRNSAQNLNNTISTLQTGSLLQTIPTSLDFAQLQQTNSAELNPGNNDLSGGPTSFVNNVFGGCAMNSQTQRMYELHGSRQVDISISGCNNLLGSYEYPENWQGSNPLVLSDSNAPNRDLLLDKVIQSTTNNMTPRQRWEDHSSVSAINSLSPANEVIRRHVNQLNGSEFVQPNTVEKHTFDMQDGYLQSSFGSLDDIINTMDKP 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2810489 2813375 - Conep04aG0063100.1 Cone4ag0611 435589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0611 547 Gene3D - 206 269 - -
Cone4ag0611 547 SMART REC_2 26 138 IPR001789 GO:0000160(InterPro)
Cone4ag0611 547 MobiDBLite consensus disorder prediction 149 171 - -
Cone4ag0611 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 344 IPR045279 GO:0009736(InterPro)
Cone4ag0611 547 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Cone4ag0611 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Cone4ag0611 547 MobiDBLite consensus disorder prediction 186 208 - -
Cone4ag0611 547 FunFam Two-component response regulator 206 269 - -
Cone4ag0611 547 Pfam Response regulator receiver domain 28 136 IPR001789 GO:0000160(InterPro)
Cone4ag0611 547 Gene3D - 25 156 - -
Cone4ag0611 547 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Cone4ag0611 547 CDD REC_typeB_ARR-like 28 142 - -
Cone4ag0611 547 PIRSF RR_ARR_type-B 3 544 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone4ag0611 547 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160(InterPro)
Cone4ag0611 547 SUPERFAMILY CheY-like 25 146 IPR011006 -
Cone4ag0611 547 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0611 Cone-Chr4:2810489 Cone8ag0716 Cone-Chr8:7215291 3.25E-82 dispersed
Cone16ag0459 Cone-Chr16:6854189 Cone4ag0611 Cone-Chr4:2810489 3.66E-137 wgd
Cone2ag0549 Cone-Chr2:3080122 Cone4ag0611 Cone-Chr4:2810489 3.73E-136 wgd
Cone20ag0334 Cone-Chr20:1496150 Cone4ag0611 Cone-Chr4:2810489 8.50E-68 wgd
Cone4ag0611 Cone-Chr4:2810489 Cone4ag1755 Cone-Chr4:12894931 1.68E-118 wgd
Cone4ag0611 Cone-Chr4:2810489 Cone7ag1672 Cone-Chr7:11219297 5.62E-119 wgd
Cone4ag0611 Cone-Chr4:2810489 Cone7ag0579 Cone-Chr7:2779087 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45937 PF00403 HMA 4.30E-13 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0611 K14491 - csv:101213687 470.7