Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0612 ATGAAATGCCAAGCTGAAACACCATTCATTTCATCAATGGCTTCCAAACTTCTTAACCTCCTTTTCTTCCTCATTCTTTTACCAAAGCTTTCCTCCTCAACTCCAAAACCATGGATCAGAGCAGGCTATTACTACTCCGGGAATGAATTTCCAGTCACAGAGATTAATTCCAAGCTCTTCACTCATCTTCTATGTGCTTTTGCTTACATAAACTATTCTACCTATCAACTCTCAATCAACTCCTCCACACTACAAAAGTTCTCCACCTTCACCAATATTGTCCAGAGGCAAAACCCTTCTATCATATCGCTGATCTCCATATGGGTCGGAAGAGAGCAGTCATCAATCTTCTATGTAATGCTAAACCACTCTACATATCGCAAAGCTTTCATTGAATCTTCTATCAAATCTGCCCGGATAAACAAATTTCATGGCATAGATCTTTGTGGGATTTTACCCTACAACAGCTTGGCCATGACCAATTTAGGAACCCTCTTACTTAACGAATGGAGGATTGCAGTTGCTTCTGAGTCGAGAAACTCCGGCCTGGCAGAATTGCTCTTGGTTATGTCCAGTTTCTATTTGCCAATGGGTTATCCAATCAAATCAATGCAGAGGAATTTAGATTGGGTCCATGTTTTGGCCTATGATTACCACCTTCCAAAGAAGGAGAATTTCACAAACTTCCATGCTCCTTTGTTCGGTCCTTTAAACCAAATAAACACTGATTATGGAATTAAGGAGTGGCTAAGAAGTGGTTTTCCTGCTAATAAACTCGTTTTAGGCTTGCCTTATCATGGGTATGCATGGATGCTCGATAACCCGAAAGAGAATATGATTGGTTCACCTGCAATTGGCCCAGCTGTCACTTTAGACGGGTCCATGGCTTATAAGTTGATCAAATGGTACATCCAGAATTTAGGATATGGAGCCGTTTCGGTTTTTAATGCCACTTATGTTGTGAATTATTGTACAATTGCGTCAACTTGGATTAATTATGATGATGTGGAGGCAATCAAGACCAAAGTTTCTTATGCCAGGAAAAAGGGTCTAATTGGTTACAATGTGTTTCAGGTCGGCAATGACTATAATTGGGTGCTATCTCGTGCAGCTCAAGAGGCTGCTGAAGATAGACAAATGAAGCATTGGTCATTGTTAATTATCATCATACTTCCAACATCTCTGTTTGTTCTGATTCTAGGCTCCATAATTTGTTACTTACAACTGATAAAACGAGCCCTTACACGATTTAAGGATGATATTAAATCTTTAGCATCTAAACTAAACGCTAAGATATTTCGAAGTCTCAATAACAATTCTCCTAATCTTGTGGTCTTCACTTTTACTAACATCAAATCGGCCACAAACAACTTCTCAAGTGAAAATAAGCTTGGTGAGGGCGGATTTGGACCTGTTTACAAGGGTAAATTATTGACAGGACAAGAAATAGCAGTGAAGAGACTTTCAAAGACCTCAAGCCAGGGCCTTGAAGAGTTCAAAAATGAGATTACAGTTATGGGGAGACTGCAACACGTTAATCTAGTTAGACTTCTTGGATATTGCACTGAGAGAGAAGAGAAAATGCTCATCTATGAATGCATGCCAAAAAAAAGCTTGGATCTCTACCTCTTTGATCCAATGAGGCAATGTGTCTTAGACTGGAAGAAACGCATTCATATCATTGAAGGGGTTACTCAAGGGCTTTTGTATTTACAAGAGTATTCAAATTTTACTATCATTCATCGTGATCTGAAAGCTAGCAACATTTTACTTGACGATGAAATGAACCCCAAGATATCAGATTTCGGTTTGGCTAGAATCTTCCAGAAAGATGTACATACAGCCAACACCAGGCGGATTGTCGGAACATACGGTTGTATTCCTCCAGAATATATAAGGAAAGGTATATACTCCATGAAATATGACATATATAGCTTTGGTGTTCTACTTCTTCAAATAATCAGTGGGAAGAGGAACACGAGTTACTACGGCATTCACCAAAACTTAAGCCTTCTTGAATACGCATATGATTTGTGGAAAGAAGGTAAGTCAATGGAGTTCATGGACCCTTCATTGGACGATTGGTCATCCTCGTCGTGTAAGCTAACGATGTGCCTACAAGTTGCCTTGTTATGTGTCCAAGAAAACCCAATGGATAGACCATCAATGTTGGAAGTTTATTCAATGCTCAAGAGTGAAACTACAGATTTTGTTGTATGTCCTAATAGGCCTGCCTTTTCAATTGTGAGGGATCAAATATCTGGCGAAGATCATAAAAACATGTTGGGTGAACATATTTGCTCAGTTAATCTAGTAACTGTGTCTGACGTCGTACCACGATGA 2343 39.35 MKCQAETPFISSMASKLLNLLFFLILLPKLSSSTPKPWIRAGYYYSGNEFPVTEINSKLFTHLLCAFAYINYSTYQLSINSSTLQKFSTFTNIVQRQNPSIISLISIWVGREQSSIFYVMLNHSTYRKAFIESSIKSARINKFHGIDLCGILPYNSLAMTNLGTLLLNEWRIAVASESRNSGLAELLLVMSSFYLPMGYPIKSMQRNLDWVHVLAYDYHLPKKENFTNFHAPLFGPLNQINTDYGIKEWLRSGFPANKLVLGLPYHGYAWMLDNPKENMIGSPAIGPAVTLDGSMAYKLIKWYIQNLGYGAVSVFNATYVVNYCTIASTWINYDDVEAIKTKVSYARKKGLIGYNVFQVGNDYNWVLSRAAQEAAEDRQMKHWSLLIIIILPTSLFVLILGSIICYLQLIKRALTRFKDDIKSLASKLNAKIFRSLNNNSPNLVVFTFTNIKSATNNFSSENKLGEGGFGPVYKGKLLTGQEIAVKRLSKTSSQGLEEFKNEITVMGRLQHVNLVRLLGYCTEREEKMLIYECMPKKSLDLYLFDPMRQCVLDWKKRIHIIEGVTQGLLYLQEYSNFTIIHRDLKASNILLDDEMNPKISDFGLARIFQKDVHTANTRRIVGTYGCIPPEYIRKGIYSMKYDIYSFGVLLLQIISGKRNTSYYGIHQNLSLLEYAYDLWKEGKSMEFMDPSLDDWSSSSCKLTMCLQVALLCVQENPMDRPSMLEVYSMLKSETTDFVVCPNRPAFSIVRDQISGEDHKNMLGEHICSVNLVTVSDVVPR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2817433 2820806 - Conep04aG0063200.1 Cone4ag0612 435590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0612 780 SMART serkin_6 458 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0612 780 Pfam Glycosyl hydrolases family 18 43 362 IPR001223 GO:0005975(InterPro)
Cone4ag0612 780 Gene3D Phosphorylase Kinase; domain 1 432 533 - -
Cone4ag0612 780 SMART 2g34 39 362 IPR011583 GO:0008061(InterPro)
Cone4ag0612 780 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 38 378 IPR001223 GO:0005975(InterPro)
Cone4ag0612 780 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 352 746 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone4ag0612 780 Gene3D Glycosidases 53 363 - -
Cone4ag0612 780 FunFam Chitotriosidase-1 265 333 - -
Cone4ag0612 780 CDD STKc_IRAK 464 731 - -
Cone4ag0612 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0612 780 FunFam Uncharacterized protein 433 533 - -
Cone4ag0612 780 CDD GH18_plant_chitinase_class_V 37 368 - -
Cone4ag0612 780 Gene3D Transferase(Phosphotransferase) domain 1 534 739 - -
Cone4ag0612 780 SUPERFAMILY Protein kinase-like (PK-like) 439 730 IPR011009 -
Cone4ag0612 780 FunFam Uncharacterized protein 534 739 - -
Cone4ag0612 780 ProSiteProfiles Protein kinase domain profile. 458 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0612 780 SUPERFAMILY (Trans)glycosidases 40 364 IPR017853 -
Cone4ag0612 780 Gene3D - 265 333 IPR029070 -
Cone4ag0612 780 SUPERFAMILY Chitinase insertion domain 266 333 IPR029070 -
Cone4ag0612 780 Pfam Protein tyrosine and serine/threonine kinase 461 729 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0437 Cone-Chr2:2350642 Cone4ag0612 Cone-Chr4:2817433 5.96E-143 dispersed
Cone4ag0612 Cone-Chr4:2817433 Cone9ag1037 Cone-Chr9:5554390 6.46E-107 dispersed
Cone4ag0612 Cone-Chr4:2817433 Cone4ag0613 Cone-Chr4:2827735 1.78E-35 tandem
Cone16ag0455 Cone-Chr16:6840552 Cone4ag0612 Cone-Chr4:2817433 2.52E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82745 PF03479 PCC 1.00E-28 CL0615 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0612 - - - 0.0