Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0666 ATGTCAAGCTGCATCGATGTTGCACCTCAAGAGCAACTTTGCTATATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCACCAACATATTTGACATAGTGACAGTCCGATGTGGGCACTGCACCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTTCAGTCTCTCTCCTGGCAAGAAAGCCCCCAGGTACCCAACTTCAACTTATATGGTACCGGACCGGAGAATTATCGGATCGATTCAAGTTCTTCATCCAAAAGCAACAACAAGATGGCAATGCGAGCTGCACCCACCGCACATTATACTGAGGAGAGAGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGGGTACCTTCTGCATACAACCAATTCATAAAAGAGGAAATCCAAAGGATCAAGGCCAATAATCCAGACATAAGCCACAGGGAAGCATTCAGCGCTGCTGCCAAAAATTGGGCACACTTCCCTCATATTCATTTCGGATTAATGTTGGAGACCAACAGTCAAGTGAAGCTGGATAATGGCTCAGAGAAACATCGAAGGCCAAGGGCTTCACTTCTCAGCAAATGA 582 46.74 MSSCIDVAPQEQLCYIPCNFCNIVLAVSVPCTNIFDIVTVRCGHCTNLWSVNMAAAFQSLSWQESPQVPNFNLYGTGPENYRIDSSSSSKSNNKMAMRAAPTAHYTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSAAAKNWAHFPHIHFGLMLETNSQVKLDNGSEKHRRPRASLLSK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3264688 3268145 + Conep04aG0069400.1 Cone4ag0666 435644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0666 193 CDD HMG-box_SF 120 156 - -
Cone4ag0666 193 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cone4ag0666 193 SUPERFAMILY HMG-box 109 159 IPR036910 -
Cone4ag0666 193 PANTHER PROTEIN YABBY 6-RELATED 9 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cone4ag0666 193 FunFam axial regulator YABBY 5-like 104 162 - -
Cone4ag0666 193 Gene3D High mobility group box domain 104 161 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0666 K25796 - - gmx:100499942 304.293
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0372 Cone-Chr12:2132460 Cone4ag0666 Cone-Chr4:3264688 4.82E-50 dispersed
Cone1ag0390 Cone-Chr1:3399838 Cone4ag0666 Cone-Chr4:3264688 5.76E-26 dispersed
Cone4ag0666 Cone-Chr4:3264688 Cone8ag0386 Cone-Chr8:2354763 4.83E-52 dispersed
Cone4ag0666 Cone-Chr4:3264688 Cone7ag0628 Cone-Chr7:3163738 3.90E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0895 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 66.9 1.9e-49 193.0
Cone19ag0892 . 1 155 C2C2-YABBY Transcription Factor Family AT1G69180 58.2 1.1e-41 167.2
Cone9ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 3.9e-41 165.2
Cone12ag0372 . 66 230 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 6.7e-41 164.5
Cone8ag0386 . 69 233 C2C2-YABBY Transcription Factor Family AT2G45190 57.5 7.4e-40 161.0
Cone6ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 53.5 4.8e-39 158.3
Cone11ag1432 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 60.0 4.0e-50 195.3
Cone12ag0372 . 23 205 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.0e-42 169.1
Cone6ag0698 . 26 218 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 3.4e-41 165.6
Cone8ag0386 . 26 202 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 4.4e-41 165.2
Cone4ag0666 . 11 175 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 9.8e-41 164.1
Cone18ag0157 . 1 150 C2C2-YABBY Transcription Factor Family AT1G08465 60.7 9.8e-41 164.1
Cone9ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.8 2.8e-52 202.6
Cone6ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.5 8.2e-52 201.1
Cone8ag0386 . 36 232 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 1.1e-45 180.6
Cone12ag0372 . 33 229 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 2.2e-44 176.4
Cone4ag0666 . 11 176 C2C2-YABBY Transcription Factor Family AT2G26580 72.5 5.3e-62 234.6
Cone11ag1432 . 4 177 C2C2-YABBY Transcription Factor Family AT2G26580 54.6 4.9e-44 174.9
Cone6ag0698 . 26 200 C2C2-YABBY Transcription Factor Family AT2G26580 50.8 1.3e-41 166.8
Cone9ag0698 . 26 208 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 1.8e-41 166.4
Cone8ag0386 . 26 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.9e-40 162.9
Cone12ag0372 . 23 193 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45939 None None None None Cone TF