Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0666 ATGTCAAGCTGCATCGATGTTGCACCTCAAGAGCAACTTTGCTATATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCACCAACATATTTGACATAGTGACAGTCCGATGTGGGCACTGCACCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTTCAGTCTCTCTCCTGGCAAGAAAGCCCCCAGGTACCCAACTTCAACTTATATGGTACCGGACCGGAGAATTATCGGATCGATTCAAGTTCTTCATCCAAAAGCAACAACAAGATGGCAATGCGAGCTGCACCCACCGCACATTATACTGAGGAGAGAGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGGGTACCTTCTGCATACAACCAATTCATAAAAGAGGAAATCCAAAGGATCAAGGCCAATAATCCAGACATAAGCCACAGGGAAGCATTCAGCGCTGCTGCCAAAAATTGGGCACACTTCCCTCATATTCATTTCGGATTAATGTTGGAGACCAACAGTCAAGTGAAGCTGGATAATGGCTCAGAGAAACATCGAAGGCCAAGGGCTTCACTTCTCAGCAAATGA 582 46.74 MSSCIDVAPQEQLCYIPCNFCNIVLAVSVPCTNIFDIVTVRCGHCTNLWSVNMAAAFQSLSWQESPQVPNFNLYGTGPENYRIDSSSSSKSNNKMAMRAAPTAHYTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSAAAKNWAHFPHIHFGLMLETNSQVKLDNGSEKHRRPRASLLSK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3264688 3268145 + Conep04aG0069400.1 Cone4ag0666 435644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0666 193 CDD HMG-box_SF 120 156 - -
Cone4ag0666 193 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cone4ag0666 193 SUPERFAMILY HMG-box 109 159 IPR036910 -
Cone4ag0666 193 PANTHER PROTEIN YABBY 6-RELATED 9 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cone4ag0666 193 FunFam axial regulator YABBY 5-like 104 162 - -
Cone4ag0666 193 Gene3D High mobility group box domain 104 161 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0372 Cone-Chr12:2132460 Cone4ag0666 Cone-Chr4:3264688 4.82E-50 dispersed
Cone1ag0390 Cone-Chr1:3399838 Cone4ag0666 Cone-Chr4:3264688 5.76E-26 dispersed
Cone4ag0666 Cone-Chr4:3264688 Cone8ag0386 Cone-Chr8:2354763 4.83E-52 dispersed
Cone4ag0666 Cone-Chr4:3264688 Cone7ag0628 Cone-Chr7:3163738 3.90E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45939 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0666 K25796 - gmx:100499942 304.293