Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0691 ATGGAGGACAAGAAAACCAACATAGTCGTTCTTTCAATCCTCACCACCCTCACCGGTTCCATAATCGTTGCCCGTATCGTCCTCAAACTCTCCAAACCTTTCTTCCTCATATGTGGCATCAACATCTCACTAATAGCAGCTCTAATCATCTACGCCATCATCCGAAGAAAGGATAACCTAAGAAGAAGGCAGTTCGAGTCTCAACTCGTTTCGGAAGGTAAAGAGCTTCGAATTGAGTATAGTTTCCTCCGTAAAGTGGCCGGACTTCCAACCAAGTTCAGGTACAAAGAGCTTGTAGATGCAACCGATGATTTCCGATTATTGATCGGTCAGGGTGCATCAGCTTCCGTGTTCAAAGGAATTCTCAAGGACGGAACTTCCATTGCGGTAAAACGGATCGAAGGAGAAAATCAAAACGGGGAGAGAGTTTTTAAAGCAGAAGTGGCCGCTATTGCCAGTGTTCATCATGTAAATCTAGTCCGTCTTCATGGGTATTGTACAATTAATCCAGATGGACCCAGATTTCTGGTCTACGATTTTATCCCAAACGGATCTTTAGATTGCTGGATTTTCCCGACAAACAAACGGAAAAATTGCTTCTCTGGAGGCTGTTTGTCTTGGGAGTTGCGGTACAAAGTTGCGGTTGATGTTGCAAAAGCGCTTTCTTACCTACACAATGATTGTAGATCTAGGGTTTTGCATTTGGATGTGAAGCCGGAGAATATTCTTCTTGATGAGAATTTCAACGCAGTCGTATCGGATTTTGGAGTCTCGAAGCTTATGCGAAAAGATCTTAGCAGAGTGGTTACGACGGTGAGAGGGACAAGAGGTTATTTAGCTCCGGAATGGCTCTTACAAAATGGAGTTTCGGAAAAGTCCGATATCTATAGCTACGGGATGGTGCTTTTGGAGATGATTGGAGGGAGAAGGAATATTACTTTCGTGGAGAATGAGAATGAAAGATGTGGAAGGAAATGGGAGTATTTTCCCAGAATTTTGAAGGAGAAGATGAATGAAGGAAAATTGATGGATGTTTTGGATTGGAGGTTATTAGAGGAAGGGAGGGTTGATGAGAGGGAAGTGAAGAGATTGGTTAATGTGGCTTTTTGGTGTATACAGGAGAAACCTAGGTTGAGGCCAAGTATGGATAATGTGGTGGAGATGCTTGATGGGCGGGTGGCCGTGGCGGAGCCGCCAGATACTCCAATGATTGTTGTTGATATATTGGCTATAGATGATCAAGAAGAACAATCACAAGATCATTGCCATAAAAATTACATTCCGGCGAAGAATCTCGCAATGCAAGCAAGACGGCAGCTAGGACTTGATGGTGATGGCGCATCATCGTCGATGCATTCATTTGCCATGTCTATTGTATCACCACGGTGA 1389 43.77 MEDKKTNIVVLSILTTLTGSIIVARIVLKLSKPFFLICGINISLIAALIIYAIIRRKDNLRRRQFESQLVSEGKELRIEYSFLRKVAGLPTKFRYKELVDATDDFRLLIGQGASASVFKGILKDGTSIAVKRIEGENQNGERVFKAEVAAIASVHHVNLVRLHGYCTINPDGPRFLVYDFIPNGSLDCWIFPTNKRKNCFSGGCLSWELRYKVAVDVAKALSYLHNDCRSRVLHLDVKPENILLDENFNAVVSDFGVSKLMRKDLSRVVTTVRGTRGYLAPEWLLQNGVSEKSDIYSYGMVLLEMIGGRRNITFVENENERCGRKWEYFPRILKEKMNEGKLMDVLDWRLLEEGRVDEREVKRLVNVAFWCIQEKPRLRPSMDNVVEMLDGRVAVAEPPDTPMIVVDILAIDDQEEQSQDHCHKNYIPAKNLAMQARRQLGLDGDGASSSMHSFAMSIVSPR 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3456765 3458266 + Conep04aG0072000.1 Cone4ag0691 435669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0691 462 SUPERFAMILY Protein kinase-like (PK-like) 85 389 IPR011009 -
Cone4ag0691 462 FunFam Putative receptor-like protein kinase 181 397 - -
Cone4ag0691 462 Pfam Protein kinase domain 108 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0691 462 PANTHER OS07G0415500 PROTEIN 38 409 - -
Cone4ag0691 462 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524(InterPro)
Cone4ag0691 462 ProSiteProfiles Protein kinase domain profile. 103 404 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0691 462 Gene3D Phosphorylase Kinase; domain 1 67 180 - -
Cone4ag0691 462 FunFam Putative receptor-like protein kinase 70 180 - -
Cone4ag0691 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0691 462 Gene3D Transferase(Phosphotransferase) domain 1 181 397 - -
Cone4ag0691 462 SMART serkin_6 103 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0691 Cone-Chr4:3456765 Cone5ag0905 Cone-Chr5:3880989 4.06E-89 dispersed
Cone4ag0691 Cone-Chr4:3456765 Cone4ag1783 Cone-Chr4:12996990 2.70E-94 transposed
Cone4ag0691 Cone-Chr4:3456765 Cone4ag1790 Cone-Chr4:13026499 2.26E-99 transposed
Cone4ag0691 Cone-Chr4:3456765 Cone7ag1698 Cone-Chr7:11318915 2.70E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82749 PF13041 PPR_2 4.10E-09 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0691 - - - 0.0