Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0705 ATGAAGAAGGTAATCGAGTACAAATTCAACGAAGATGGCAATAAGGTCAAGGTCACTACGATTTCTCGCACTCGCCAACTTGCAAACGCTCGCCTTAGCAGGCGCGCCTTGGAGCGCCGGTCTTGGCCCAAGTTTAGCGATGCTGTGCACGAAGATGTTGGTAGCAGGCTCACCATGGTTTCTACTGAAGAAATCCTGCTCGAGCGCCAGCGCCCTGGGGCTCCTGGTAGCAAAGTGGAAGAGCCCAAACCAGCTGGTAACCCATTGGCTCAAATGGGGAAGGGAGGTGCTGTTCTCATGGATCTGGCCCAACCCTCTGAGGGCTTCATCGACCAGCCTGCTGCTTTAGAGACTACAGCTGCCTCACCTGGTGGGCCTGCCAAATCAACATATGTTCCCCCAGGCATGAGGGCTGGAGCAGAAAGGAGTGCTGGATCCGATATGCGATGTAGAAACGATGATAACTCTGTTAGAGTGACTAACCTCTCAGAGGACACAAGGGAGCCGGACTTGCTCGAGCTTTTCAGACCATTTGGTGCAGTGAGCCGTGTCTATGTTGCTGTTGACCAGAAGACGGGGATGAGCAGAGGGTTCGGGTTTGTGAACTTTGTGAACAGGGAAGAGGCCCAGAGAGGCATCAACAAGCTCAATGGCTATGGTTACGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCTAGGGCAACTTAA 711 52.88 MKKVIEYKFNEDGNKVKVTTISRTRQLANARLSRRALERRSWPKFSDAVHEDVGSRLTMVSTEEILLERQRPGAPGSKVEEPKPAGNPLAQMGKGGAVLMDLAQPSEGFIDQPAALETTAASPGGPAKSTYVPPGMRAGAERSAGSDMRCRNDDNSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREEAQRGINKLNGYGYDNLILRVEWATPRAT 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3690151 3691620 + Conep04aG0073400.1 Cone4ag0705 435683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0705 236 Gene3D - 123 236 IPR012677 -
Cone4ag0705 236 CDD RRM_eIF3G_like 156 231 IPR034240 -
Cone4ag0705 236 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 5 231 - -
Cone4ag0705 236 Pfam RNA recognition motif 157 223 IPR000504 GO:0003723(InterPro)
Cone4ag0705 236 Pfam Eukaryotic translation initiation factor 3 subunit G 2 77 IPR024675 -
Cone4ag0705 236 PIRSF Transl_init_eIF-3_RNA-bind 1 236 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cone4ag0705 236 SMART rrm1_1 156 229 IPR000504 GO:0003723(InterPro)
Cone4ag0705 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723(InterPro)
Cone4ag0705 236 MobiDBLite consensus disorder prediction 117 153 - -
Cone4ag0705 236 FunFam Eukaryotic translation initiation factor 3 subunit G 118 236 - -
Cone4ag0705 236 SUPERFAMILY RNA-binding domain, RBD 143 234 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0276 Cone-Chr11:1337952 Cone4ag0705 Cone-Chr4:3690151 6.38E-139 dispersed
Cone3ag1223 Cone-Chr3:30993176 Cone4ag0705 Cone-Chr4:3690151 6.23E-07 dispersed
Cone4ag0705 Cone-Chr4:3690151 Cone6ag0518 Cone-Chr6:2587301 4.48E-09 dispersed
Cone4ag0705 Cone-Chr4:3690151 Cone18ag1212 Cone-Chr18:8630108 3.37E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0705 K03248 - csv:101212619 362.844