Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0716 ATGAAGAAGACTCACTGCGACATCAGCTTTGGCCTCTCGCTACTTCTCATTGCTTTCTTCTTCACAGCTCTACTTCATGCTTCTGCTTCTGAGAAGCTTTTCTCTCTGTCGAACAATGGCGGCGGCCTCACTGACACTGAAGCTTTCTACATCAAGCAACGCCAGCTTCTCTACTACAGAGACGAGTTCGGTGACAGAGGTGAGAACGTCACCGTCGATCCTTCTTTAATCTTCGAAAACGGAAGGATTCGAAATGCTTACATCGCTTTACAAGCTTGGAAACAAGCTATTCTTTCTGATCCACTAAACTTCACTGTCGACTGGACCGGATCTGATGTCTGTAACTACACTGGAGTTTTCTGTGCTCCGGCGCCGGATAATCACCGGATCCGAACCGTCGCCGGCATTGATCTAAACCACGGTGACATTGCCGGTTACTTACCGGAAGAGCTAGGTTTACTTGTAGATCTTGCTCTGTTTCACATTAACTCGAACAGGTTCTGTGGCACAGTGCCTCATAAGTTCAGGAATATGAAGCGGCTTTTCGAACTGGATCTGAGCAACAATCGATTCGCCGGAAAGTTTCCTGAAGTTGTTCTTAAGCTTCCGTCGCTTAAATTCTTGGATCTGAGATTTAACGAGTTTGAAGGCGCTGTTCCGAAGCAGCTCTTCGACAAGGATCTGGACGCCATTTTCATAAACCACAATCGATTCAGGTTCGAGCTGCCGGAAAATTTCGGTAACTCTCCGGTCTCCGTGATAGTGCTGGCGGACAACAAGTTTCATGGCTGCGTGCCGGCGAGCTTAGGCAACATGACGAGGCTGAACGAGATTATACTGATGAACAATGGCTTCCGCTCATGCTTACCGCCTGAGATAGGGTTTCTGAAAAACTTAACGGTGTTCGATGTGAGCTATAACGAACTCCTCGGTCCACTGCCAGACACGATCGGAGGAATGGTGAGCTTAGAGCAACTGAACGTAGCGCATAATTTGCTCTCGGGGAATATTCCGGCGAGCATTTGTCAGTTGCCGAATCTACAGAACTTCACGTTTTCGTACAATTTCTTCACGGGCGAACCGCCGGTTTGTTTGAGATTAGCAGATTTTGATGACCGGAGAAACTGCTTGCCTGGAAGGTCGTTACAGAGATCTAGTGCGCAATGTAATTCCTTCTTGTCTAAGCCTGTGGATTGTAACTCGTTTGGATGTGCTTCTTTTGGACCTTCTCCGCCTGTTCATCCCACTCCCCATTCGCCGCCACATTCAACACCTGGTGGGGCGCACTCGCCCGCCTTTCCTCCGCAGGTTTCTTCGCCTTCACCTGTTCACCAATCTCCCCATTTGCCGCCACATTCAACACCTGGTGTGGCGCACTCGCCCACCCTCTCTCCTCCAGTTTCTCCGCCTTCTCCTCCTGTTCATCGCTCTCCCCAGTCGCCGCCACATTCATCATCTGGTGGGGCACACTCGCCCTCCCATTCGCCCCAATCACAACCCACGCCCGGTTCGCCCCCTCTTACATCACCACTGTCTCCACCTTCACCCTCCCCATCAACACCACCAATCTACTCTCCTGCCCCTTCGACATCTTCTGCACCTCCAGTTTACTCTCCTCCCGCCCCACATCTGCCATCAATTTCACCAACCCCTTCATATCCGCAAAAACCGCCAATAAGTTCTCCAGGACCATCATCTCCAACCCCATCTCCATCTCCATCTCCATCTCCATCTCCAGGCCTACCTCCACCGTATTCTTCGCCACCACTGCCATCAACCTCGCCACAACCATCATCTCCATCACCATCTCCGCCCCCATCCCCGTCCCTACCTCCATTATATTCTTCACCACCAACGCCATCGATTTCTCCACAGCCATCATCATCTCCATATTGTTCACCACTATTGCCTCCACTATATTCTCCGCCGCCATTACCCACTCCCCCACATTTACCTCCACCGCTAGTTTATCCCTATCCACCACCACCACCATCTCCTCCATCAGCTTCACAGCCACCTCCATCTCCACCTCCATCACCATCGTCTTCACCTCCTCCACCCATTCACTATGTATCTCCCGCTTCACCATCACCTCCTTCACCCCATCCCTATACATATTACTCACCACCCCCACCATCTCCATCACCTCCTCCACCCACTCATTATCTACCTCCCGCTTCACCATCACCTCCTTCACCTCCTCCCTCTACATATTACTCACCTCCCCAACCATCTCCATCACCTCCTCCCTATACATATTATTCACATCCACCTCCACCTCCGCCTCCATCACCATCACCTCCACCACCCTATGTGTATCACTCACCTCCTCCACCACCTCCAATACAATACCATTCACATCCTCCACCAACTCTCTCACCACCATTGCCTTCTCCTCCTCATCCATATAATTCCCCACCACCACCGCCAATTCAGTACCATTCTCCTCCCCCTCCATCACCCCCTCCAGTCTCACATGAGTGTCCTCCGCCCTCTGCACCACCACCACCACCACCAATTGTTATCTACCAAAGCCCCCCACCTCCTATGCCCGTGTATGAGGGGCCTTTGCCGCCAATCCATGGAGTTTCGTATGCTTCCCCCCCTCCACCACCCTTCTATTGA 2625 51.66 MKKTHCDISFGLSLLLIAFFFTALLHASASEKLFSLSNNGGGLTDTEAFYIKQRQLLYYRDEFGDRGENVTVDPSLIFENGRIRNAYIALQAWKQAILSDPLNFTVDWTGSDVCNYTGVFCAPAPDNHRIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFRNMKRLFELDLSNNRFAGKFPEVVLKLPSLKFLDLRFNEFEGAVPKQLFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLADNKFHGCVPASLGNMTRLNEIILMNNGFRSCLPPEIGFLKNLTVFDVSYNELLGPLPDTIGGMVSLEQLNVAHNLLSGNIPASICQLPNLQNFTFSYNFFTGEPPVCLRLADFDDRRNCLPGRSLQRSSAQCNSFLSKPVDCNSFGCASFGPSPPVHPTPHSPPHSTPGGAHSPAFPPQVSSPSPVHQSPHLPPHSTPGVAHSPTLSPPVSPPSPPVHRSPQSPPHSSSGGAHSPSHSPQSQPTPGSPPLTSPLSPPSPSPSTPPIYSPAPSTSSAPPVYSPPAPHLPSISPTPSYPQKPPISSPGPSSPTPSPSPSPSPSPGLPPPYSSPPLPSTSPQPSSPSPSPPPSPSLPPLYSSPPTPSISPQPSSSPYCSPLLPPLYSPPPLPTPPHLPPPLVYPYPPPPPSPPSASQPPPSPPPSPSSSPPPPIHYVSPASPSPPSPHPYTYYSPPPPSPSPPPPTHYLPPASPSPPSPPPSTYYSPPQPSPSPPPYTYYSHPPPPPPPSPSPPPPYVYHSPPPPPPIQYHSHPPPTLSPPLPSPPHPYNSPPPPPIQYHSPPPPSPPPVSHECPPPSAPPPPPPIVIYQSPPPPMPVYEGPLPPIHGVSYASPPPPPFY 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3857442 3860731 - Conep04aG0074500.1 Cone4ag0716 435694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0716 874 MobiDBLite consensus disorder prediction 462 479 - -
Cone4ag0716 874 MobiDBLite consensus disorder prediction 480 497 - -
Cone4ag0716 874 FunFam Leucine-rich repeat extensin-like protein 5 249 388 - -
Cone4ag0716 874 PRINTS Proline rich extensin signature 493 510 - -
Cone4ag0716 874 PRINTS Proline rich extensin signature 409 421 - -
Cone4ag0716 874 PRINTS Proline rich extensin signature 466 482 - -
Cone4ag0716 874 PRINTS Proline rich extensin signature 431 452 - -
Cone4ag0716 874 PRINTS Proline rich extensin signature 514 539 - -
Cone4ag0716 874 MobiDBLite consensus disorder prediction 413 428 - -
Cone4ag0716 874 FunFam Leucine-rich repeat extensin-like protein 1 87 248 - -
Cone4ag0716 874 Pfam Leucine rich repeat 159 214 IPR001611 GO:0005515(InterPro)
Cone4ag0716 874 Pfam Leucine rich repeat N-terminal domain 89 121 IPR013210 -
Cone4ag0716 874 Gene3D Ribonuclease Inhibitor 86 375 IPR032675 -
Cone4ag0716 874 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 29 537 IPR051582 -
Cone4ag0716 874 MobiDBLite consensus disorder prediction 435 449 - -
Cone4ag0716 874 MobiDBLite consensus disorder prediction 413 842 - -
Cone4ag0716 874 MobiDBLite consensus disorder prediction 498 842 - -
Cone4ag0716 874 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Cone4ag0716 874 Pfam Leucine Rich Repeat 322 344 IPR001611 GO:0005515(InterPro)
Cone4ag0716 874 SUPERFAMILY L domain-like 87 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0716 Cone-Chr4:3857442 Cone5ag1503 Cone-Chr5:10171994 7.68E-40 dispersed
Cone16ag0754 Cone-Chr16:8541821 Cone4ag0716 Cone-Chr4:3857442 1.33E-88 wgd
Cone2ag0284 Cone-Chr2:1476204 Cone4ag0716 Cone-Chr4:3857442 8.87E-86 wgd
Cone4ag0716 Cone-Chr4:3857442 Cone4ag1835 Cone-Chr4:13239822 3.24E-62 wgd
Cone4ag0716 Cone-Chr4:3857442 Cone7ag0673 Cone-Chr7:3656919 6.13E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0716 - - - 0.0