Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0731 ATGTCAACCCCAACTCCCGGAGCCTCTCCGGCTCCGACGTCTCCGCCTGCCACTAATACTACCTCGCCTCCTGCGCCTAATGCACCGCCGCCATCGACTCCCTCTACACCTCCACCTTCTTCGGCACCACCACCTTCTACTCCAGCCACGCCATCTCCACCACCTACTTCAGCTCCGCCGCCTTCTACTCCCTCGTCTCCGCCCCCGCCAGCTTCGACTGGACCACCACCTTCCACCACTCCCTCTCCTCCTCCACCTGTTTCAACAGCCCCTCCGCCAGCTACCACTTCTTCCCCACCGCCTCCGTCAGGAACTACTCCCGCTCCCTCAACATCCTCTACTCCTCCTCCTCCTCCTCCTCCTACTCCTTCAACCTCACCTCCGACGAACTCCTCTGTATCTCCGCCGCCGCCGTCTTCTACCACATCGCCTCCTCCTTCTTCCGCAGTGCTTCTAAGTCCACCTCCCCCGTCAACTTCTGGAACTCCCTCCACTCCGTCGAAAAGTCCTCCGCCACCACCTCCAGCAACTAATTCGTCCTCGTCTTCTTCTTCATCGTCGTCCGGAATATCTTCCGGAGCCGTGATCGGAATGGTGATCGGGGGCGTAGCAGTCTTAGCAGTGTTAGCCATTCTGTTCATTTTGTTCTGCAGAAAGAAGAGAAGAACCGACGACGAAGCCGGTTACTACCCCCCGCCCCCACCTAGAAACCCGAAAGATGATCCTTACGGCGGCGGGCCCCCACAAAACTGGCGGCAAAACGCTCCGCCACCAATAGACCCATTCACCGGAGTAGCTAAGCCCCCTCCACCTCCAGGTTCTGCACTAAGACCTCCATACTCACCCATAAACCCACAATACTTAAGCATGAGTGGAAATTCCGGTTCCAACAACTCCGGGCCCGAAAACCCCCAGACACCGCCACCTGGCATGGGTGGCATGGGCTTTTCAAAGAGCACTTTCACTTACGAGGACCTGGCTCTGGCAACGGATGGTTTCTCGGATGCTAATCTGCTCGGACAAGGCGGGTTTGGGTACGTGCATAGAGGGATTTTAGCAGGGGGGAAAGAGGTAGCAATCAAGCAGTTAAAGGCTGGAAGTGGTCAAGGCGAGAGGGAGTTTCAAGCCGAAGTGGAGATTATTAGCCGGGTCCATCATAAACATCTTGTTTCCTTGGTCGGGTATTGTTCGACTGGCTCCGAGAGGTTGTTGGTGTACGAATTTGTCCCAAACAATACCTTGGAGTTCCATTTACATGGAAAAGGGCGGCCTACCATGGAATGGTCGACTAGATTGAAGATCGCATTAGGATCTGCAAAAGGGCTTGCATACCTTCACGAAGATTGTCAACCAAAAATCATTCATCGGGACATCAAAGCGGCTAATATACTTTTGGATTTCAAGTTTGAAGCAATGGTTGCTGATTTTGGACTGGCTAAGTTTTTTTCTGAGCTTAATACTCATGTATCCACCCGAGTAATGGGAACCTTTGGGTACATGGCTCCAGAATATGCTTCCAGTGGGAAACTCACTGAGAAATCCGATGTTTTCTCTTTTGGGGTCATGCTTTTAGAGTTGATCACAGGACGTAAACCTGTCGATACGACTCAGACTTTCATGGAGGATAGCTTGGTAGACTGGGCGAGGCCTTTACTGAACCGAGCTCTGGATGACGGAAACTTTGATGCTTTGGCTGATCCAAGGCTGCAAAATAATTATAATAAGGATGAAATGGCTCGAGTCATTGCTTGCGCTGCTGCTTGTGTTCGCCATTCTGGTAGGCGCCGGCCAAAGATGAGTCAGGTGGTCCGTACTTTGGAAGGGGATGCATCACTCTCGGATCTAAACGATGGGATCAGACCCGGGCATAGCTCAATTTACAGTGGAAGCTCGGACTATGACGCAAGCCAATACAATGAGGACTTGAAGAAATTCCGGAAGATGGCTTTGGGGAGCCAGGAGTACGGTGCAAGCAGTGAGTATAGTGCACCCACGACCAGTGAGTACGGTTTGAACCCCTCCGGCTCGAGCAGTGAGGTTCAGACCACGCAGGAAATGGAGCTTGGGACGATGCGGAAGAGAGAAAGTAAATAA 2094 52.77 MSTPTPGASPAPTSPPATNTTSPPAPNAPPPSTPSTPPPSSAPPPSTPATPSPPPTSAPPPSTPSSPPPPASTGPPPSTTPSPPPPVSTAPPPATTSSPPPPSGTTPAPSTSSTPPPPPPPTPSTSPPTNSSVSPPPPSSTTSPPPSSAVLLSPPPPSTSGTPSTPSKSPPPPPPATNSSSSSSSSSSGISSGAVIGMVIGGVAVLAVLAILFILFCRKKRRTDDEAGYYPPPPPRNPKDDPYGGGPPQNWRQNAPPPIDPFTGVAKPPPPPGSALRPPYSPINPQYLSMSGNSGSNNSGPENPQTPPPGMGGMGFSKSTFTYEDLALATDGFSDANLLGQGGFGYVHRGILAGGKEVAIKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGSERLLVYEFVPNNTLEFHLHGKGRPTMEWSTRLKIALGSAKGLAYLHEDCQPKIIHRDIKAANILLDFKFEAMVADFGLAKFFSELNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELITGRKPVDTTQTFMEDSLVDWARPLLNRALDDGNFDALADPRLQNNYNKDEMARVIACAAACVRHSGRRRPKMSQVVRTLEGDASLSDLNDGIRPGHSSIYSGSSDYDASQYNEDLKKFRKMALGSQEYGASSEYSAPTTSEYGLNPSGSSSEVQTTQEMELGTMRKRESK 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4028971 4032277 + Conep04aG0076000.1 Cone4ag0731 435709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0731 697 MobiDBLite consensus disorder prediction 251 279 - -
Cone4ag0731 697 SUPERFAMILY Protein kinase-like (PK-like) 311 606 IPR011009 -
Cone4ag0731 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0731 697 CDD TM_EGFR-like 194 222 - -
Cone4ag0731 697 SMART serkin_6 333 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0731 697 MobiDBLite consensus disorder prediction 1 192 - -
Cone4ag0731 697 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524(InterPro)
Cone4ag0731 697 FunFam proline-rich receptor-like protein kinase PERK1 311 408 - -
Cone4ag0731 697 MobiDBLite consensus disorder prediction 228 242 - -
Cone4ag0731 697 MobiDBLite consensus disorder prediction 612 634 - -
Cone4ag0731 697 Gene3D Transferase(Phosphotransferase) domain 1 409 617 - -
Cone4ag0731 697 MobiDBLite consensus disorder prediction 224 317 - -
Cone4ag0731 697 Pfam Protein tyrosine and serine/threonine kinase 338 606 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0731 697 MobiDBLite consensus disorder prediction 1 178 - -
Cone4ag0731 697 Gene3D Phosphorylase Kinase; domain 1 313 408 - -
Cone4ag0731 697 MobiDBLite consensus disorder prediction 654 697 - -
Cone4ag0731 697 ProSiteProfiles Protein kinase domain profile. 333 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0731 697 FunFam Proline-rich receptor-like protein kinase PERK1 409 617 - -
Cone4ag0731 697 MobiDBLite consensus disorder prediction 655 687 - -
Cone4ag0731 697 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 162 648 IPR047117 -
Cone4ag0731 697 MobiDBLite consensus disorder prediction 284 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0731 Cone-Chr4:4028971 Cone6ag1615 Cone-Chr6:12479507 3.55E-181 dispersed
Cone16ag0743 Cone-Chr16:8484471 Cone4ag0731 Cone-Chr4:4028971 4.47E-218 wgd
Cone17ag0111 Cone-Chr17:581592 Cone4ag0731 Cone-Chr4:4028971 3.57E-94 wgd
Cone2ag0294 Cone-Chr2:1523880 Cone4ag0731 Cone-Chr4:4028971 1.19E-224 wgd
Cone20ag1276 Cone-Chr20:8330605 Cone4ag0731 Cone-Chr4:4028971 6.42E-59 wgd
Cone4ag0731 Cone-Chr4:4028971 Cone4ag0940 Cone-Chr4:7847132 1.51E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82751 PF00069 Pkinase 1.60E-40 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0731 - - - 0.0