Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0755 ATGTCGTGGCAGACTTACGTCGATGAGCATTTGATGTGTGACATTGATGGCCAAGGCCAGCACCTCTCCCACGCTGCCATTGTTGGCCATGATGGCAGTGTTTGGGCCCAGAGCTCTTCCTTCCCTCAGTTTAAGGCTCAGGAGATCACTGATATCATGAAGGATTTTGAGGAACCAGGTCATCTTGCTCCAACTGGATTACACCTTGGGGGCATTAAATACATGGTTATCCAGGGAGAGTCTGGAGCTGTCATCCGTGGGAAGAAGGGATCCGGAGGTATCACTATAAAGAAGACTACACAAGCACTGGTTTTTGGCATTTATGAAGAACCTGTCACTCCAGGTCAATGCAACATGGTGGTTGAGAGGTTGGGTGATTACCTCATTGATCAGGGCCTCTAG 402 49.0 MSWQTYVDEHLMCDIDGQGQHLSHAAIVGHDGSVWAQSSSFPQFKAQEITDIMKDFEEPGHLAPTGLHLGGIKYMVIQGESGAVIRGKKGSGGITIKKTTQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4223685 4225751 + Conep04aG0078700.1 Cone4ag0755 435733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0755 133 Pfam Profilin 1 133 IPR048278 GO:0003779(InterPro)
Cone4ag0755 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cone4ag0755 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cone4ag0755 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 FunFam Profilin 1 133 - -
Cone4ag0755 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cone4ag0755 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Cone4ag0755 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0755 Cone-Chr4:4223685 Cone7ag0705 Cone-Chr7:4046613 1.56E-77 dispersed
Cone4ag0755 Cone-Chr4:4223685 Cone4ag0756 Cone-Chr4:4240613 1.74E-74 tandem
Cone17ag0127 Cone-Chr17:661704 Cone4ag0755 Cone-Chr4:4223685 1.08E-77 wgd
Cone4ag0755 Cone-Chr4:4223685 Cone4ag0971 Cone-Chr4:8408950 9.18E-31 wgd
Cone4ag0755 Cone-Chr4:4223685 Cone7ag0704 Cone-Chr7:4037336 1.96E-94 wgd
Cone4ag0755 Cone-Chr4:4223685 Cone7ag1162 Cone-Chr7:8672099 1.49E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0755 K05759 - mtr:112417225 244.973