Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0756 ATGTCTTGGCAAACTTACGTCGATGACCATCTGATGTGCGAAATCGATGGAAATCATCTCACTGCTGCCGCCATCATCGGACAAGACGGCAGCGTTTGGGCTCAGAGCGCTACCTTTCCCCAGTTCAAGCCTGAAGAAATAACTGCCATACTGAATGACTTTAATGAACCTGGAACACTTGCTCCTACTGGATTGTATCTTGGTGGTACTAAATACATGGTGATCCAGGGAGAGGCCGGAGCTGTCATTCGTGGAAAGAAGGGGGCTGGTGGTGTTACCGTTAAAAAGACCAACCAAGCATTGATCATTGGTGTCTATGATGAACCAATGACTCCCAGCCAGTGCAACATGATTGTCGAAAGGCTTGGCGATTATCTTATTGAACAGAGCCTGTAG 396 47.47 MSWQTYVDDHLMCEIDGNHLTAAAIIGQDGSVWAQSATFPQFKPEEITAILNDFNEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKKGAGGVTVKKTNQALIIGVYDEPMTPSQCNMIVERLGDYLIEQSL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4240613 4242702 + Conep04aG0078800.1 Cone4ag0756 435734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0756 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 Pfam Profilin 1 130 IPR048278 GO:0003779(InterPro)
Cone4ag0756 131 CDD PROF 2 129 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cone4ag0756 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cone4ag0756 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Cone4ag0756 131 FunFam Profilin 1 131 - -
Cone4ag0756 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0756 Cone-Chr4:4240613 Cone7ag0705 Cone-Chr7:4046613 4.66E-92 dispersed
Cone4ag0755 Cone-Chr4:4223685 Cone4ag0756 Cone-Chr4:4240613 1.74E-74 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0756 K05759 - sly:543830 248.825