Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cone4ag0756	ATGTCTTGGCAAACTTACGTCGATGACCATCTGATGTGCGAAATCGATGGAAATCATCTCACTGCTGCCGCCATCATCGGACAAGACGGCAGCGTTTGGGCTCAGAGCGCTACCTTTCCCCAGTTCAAGCCTGAAGAAATAACTGCCATACTGAATGACTTTAATGAACCTGGAACACTTGCTCCTACTGGATTGTATCTTGGTGGTACTAAATACATGGTGATCCAGGGAGAGGCCGGAGCTGTCATTCGTGGAAAGAAGGGGGCTGGTGGTGTTACCGTTAAAAAGACCAACCAAGCATTGATCATTGGTGTCTATGATGAACCAATGACTCCCAGCCAGTGCAACATGATTGTCGAAAGGCTTGGCGATTATCTTATTGAACAGAGCCTGTAG	396	47.47	MSWQTYVDDHLMCEIDGNHLTAAAIIGQDGSVWAQSATFPQFKPEEITAILNDFNEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKKGAGGVTVKKTNQALIIGVYDEPMTPSQCNMIVERLGDYLIEQSL	131

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
4	4240613	4242702	+	Conep04aG0078800.1	Cone4ag0756	435734

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cone4ag0756	131	ProSitePatterns	Profilin signature.	1	8	IPR027310	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Profilin signature	21	30	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Profilin signature	40	60	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Profilin signature	3	12	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Profilin signature	100	113	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Profilin signature	64	78	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Profilin signature	113	130	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	SMART	prof_2	1	131	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	Pfam	Profilin	1	130	IPR048278	GO:0003779(InterPro)
Cone4ag0756	131	CDD	PROF	2	129	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Plant profilin signature	52	66	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Plant profilin signature	104	117	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Plant profilin signature	71	80	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Plant profilin signature	117	130	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Plant profilin signature	1	14	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Plant profilin signature	27	40	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	PRINTS	Plant profilin signature	84	99	IPR005455	GO:0003779(InterPro)
Cone4ag0756	131	SUPERFAMILY	Profilin (actin-binding protein)	2	130	IPR036140	-
Cone4ag0756	131	Gene3D	Dynein light chain 2a, cytoplasmic	1	130	-	-
Cone4ag0756	131	FunFam	Profilin	1	131	-	-
Cone4ag0756	131	PANTHER	PROFILIN	1	130	IPR005455	GO:0003779(InterPro)\|GO:0003785(PANTHER)\|GO:0005938(PANTHER)\|GO:0042989(PANTHER)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cone4ag0756	K05759	-	-	sly:543830	248.825

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cone4ag0756	Cone-Chr4:4240613	Cone7ag0705	Cone-Chr7:4046613	4.66E-92	dispersed
	Cone4ag0755	Cone-Chr4:4223685	Cone4ag0756	Cone-Chr4:4240613	1.74E-74	tandem

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi11g251	.	.	.	.	Bpe01g00568	Bpe02g02225	.	Bma11g00549	.	.	.	.	Car05g01289	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cone4ag0756	.	.	Csa02g00079	Chy05g01410	.	Blo08g00324	.	Bda02g00405	.	Bpe08g00505	.	.	.	Sed11g0035	Cmo05g01378	.	.	.	.	.	Cpe11g01145	.	Bhi06g01686	Tan08g0107	Cmetu05g1788	.	Hepe08g2631	.	.	.	.	.	.	.	.	.	Lsi11g00216	.	.	Cme05g02014

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Cone3ag0092	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.8	2.7e-215	745.0
Cone3ag0336	.	1	377	Cytoskeleton Gene Families	AT2G37620	97.3	3.6e-215	744.6
Cone10ag0307	.	1	377	Cytoskeleton Gene Families	AT2G37620	97.3	3.6e-215	744.6
Cone9ag1250	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.0	5.2e-214	740.7
Cone13ag0532	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.3	6.8e-214	740.3
Cone12ag0043	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	2.6e-213	738.4
Cone19ag0481	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.0	3.4e-213	738.0
Cone1ag1283	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	5.7e-213	737.3
Cone5ag0269	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.2	9.7e-213	736.5
Cone8ag0044	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.2	3.7e-212	734.6
Cone8ag0048	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.2	3.7e-212	734.6
Cone1ag0645	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.2	8.3e-212	733.4
Cone9ag1264	.	1	377	Cytoskeleton Gene Families	AT2G37620	80.9	1.3e-180	629.8
Cone6ag1317	.	1	376	Cytoskeleton Gene Families	AT2G37620	80.9	6.6e-177	617.5
Cone5ag1152	.	1	253	Cytoskeleton Gene Families	AT2G37620	94.5	3.7e-135	478.8
Cone5ag1153	.	1	103	Cytoskeleton Gene Families	AT2G37620	97.1	5.8e-56	215.7
Cone10ag0079	.	1	99	Cytoskeleton Gene Families	AT2G37620	94.9	2.5e-51	200.3
Cone3ag0092	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.8	1.2e-213	739.6
Cone1ag1283	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	2.0e-213	738.8
Cone19ag0481	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.8	3.4e-213	738.0
Cone1ag0645	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	5.7e-213	737.3
Cone3ag0336	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	5.7e-213	737.3
Cone5ag0269	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.3	5.7e-213	737.3
Cone10ag0307	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	5.7e-213	737.3
Cone13ag0532	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	5.7e-213	737.3
Cone9ag1250	.	1	377	Cytoskeleton Gene Families	AT5G59370	95.0	7.0e-211	730.3
Cone12ag0043	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.7	3.5e-210	728.0
Cone8ag0044	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.7	7.7e-210	726.9
Cone8ag0048	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.7	7.7e-210	726.9
Cone9ag1264	.	1	377	Cytoskeleton Gene Families	AT5G59370	80.4	1.6e-178	622.9
Cone6ag1317	.	1	376	Cytoskeleton Gene Families	AT5G59370	80.3	5.6e-176	614.4
Cone5ag1152	.	1	253	Cytoskeleton Gene Families	AT5G59370	94.5	3.1e-134	475.7
Cone5ag1153	.	1	103	Cytoskeleton Gene Families	AT5G59370	97.1	5.8e-56	215.7
Cone10ag0079	.	1	99	Cytoskeleton Gene Families	AT5G59370	94.9	2.5e-51	200.3
Cone3ag0092	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.1	5.2e-214	740.7
Cone1ag1283	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	8.8e-214	740.0
Cone19ag0481	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.1	1.5e-213	739.2
Cone1ag0645	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	2.6e-213	738.4
Cone3ag0336	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	2.6e-213	738.4
Cone5ag0269	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.6	2.6e-213	738.4
Cone10ag0307	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	2.6e-213	738.4
Cone13ag0532	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	2.6e-213	738.4
Cone9ag1250	.	1	377	Cytoskeleton Gene Families	AT3G46520	95.2	3.1e-211	731.5
Cone12ag0043	.	1	377	Cytoskeleton Gene Families	AT3G46520	95.0	1.6e-210	729.2
Cone8ag0044	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.4	2.2e-209	725.3
Cone8ag0048	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.4	2.2e-209	725.3
Cone9ag1264	.	1	377	Cytoskeleton Gene Families	AT3G46520	80.6	7.1e-179	624.0
Cone6ag1317	.	1	376	Cytoskeleton Gene Families	AT3G46520	80.6	2.5e-176	615.5
Cone5ag1152	.	1	253	Cytoskeleton Gene Families	AT3G46520	94.9	1.4e-134	476.9
Cone5ag1153	.	1	103	Cytoskeleton Gene Families	AT3G46520	97.1	5.8e-56	215.7
Cone10ag0079	.	1	99	Cytoskeleton Gene Families	AT3G46520	94.9	2.5e-51	200.3
Cone3ag0092	.	1	377	Cytoskeleton Gene Families	AT3G12110	97.3	9.4e-216	746.5
Cone13ag0532	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.6	3.0e-214	741.5
Cone19ag0481	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.3	4.0e-214	741.1
Cone9ag1250	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.0	2.0e-213	738.8
Cone3ag0336	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.0	2.6e-213	738.4
Cone10ag0307	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.0	2.6e-213	738.4
Cone12ag0043	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.8	9.7e-213	736.5
Cone5ag0269	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	1.3e-212	736.1
Cone1ag0645	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	3.7e-212	734.6
Cone1ag1283	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	3.7e-212	734.6
Cone8ag0044	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	1.4e-211	732.6
Cone8ag0048	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	1.4e-211	732.6
Cone9ag1264	.	1	377	Cytoskeleton Gene Families	AT3G12110	81.4	1.5e-181	632.9
Cone6ag1317	.	1	376	Cytoskeleton Gene Families	AT3G12110	81.4	2.3e-177	619.0
Cone5ag1152	.	1	253	Cytoskeleton Gene Families	AT3G12110	94.1	3.7e-135	478.8
Cone5ag1153	.	1	103	Cytoskeleton Gene Families	AT3G12110	98.1	2.6e-56	216.9
Cone10ag0079	.	1	99	Cytoskeleton Gene Families	AT3G12110	96.0	1.1e-51	201.4
Cone12ag0043	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.8	8.5e-209	723.4
Cone1ag0645	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	1.5e-208	722.6
Cone9ag1250	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	2.5e-208	721.8
Cone13ag0532	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	2.5e-208	721.8
Cone3ag0092	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	4.2e-208	721.1
Cone19ag0481	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	9.4e-208	719.9
Cone8ag0044	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	1.2e-207	719.5
Cone8ag0048	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	1.2e-207	719.5
Cone3ag0336	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.5	2.7e-207	718.4
Cone10ag0307	.	1	377	Cytoskeleton Gene Families	AT3G18780	91.5	2.7e-207	718.4
Cone5ag0269	.	1	377	Cytoskeleton Gene Families	AT3G18780	90.7	8.8e-206	713.4
Cone1ag1283	.	1	377	Cytoskeleton Gene Families	AT3G18780	90.7	2.0e-205	712.2
Cone9ag1264	.	1	377	Cytoskeleton Gene Families	AT3G18780	78.5	8.6e-177	617.1
Cone6ag1317	.	1	376	Cytoskeleton Gene Families	AT3G18780	78.7	3.1e-174	608.6
Cone5ag1152	.	1	253	Cytoskeleton Gene Families	AT3G18780	90.1	3.2e-131	465.7
Cone5ag1153	.	1	103	Cytoskeleton Gene Families	AT3G18780	93.2	1.4e-54	211.1
Cone10ag0079	.	1	99	Cytoskeleton Gene Families	AT3G18780	87.9	5.8e-48	189.1
Cone12ag0043	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.1	2.9e-209	724.9
Cone9ag1250	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.8	8.5e-209	723.4
Cone3ag0092	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	1.5e-208	722.6
Cone1ag0645	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.0	3.2e-208	721.5
Cone8ag0044	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.6	4.2e-208	721.1
Cone8ag0048	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.6	4.2e-208	721.1
Cone13ag0532	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.0	5.5e-208	720.7
Cone3ag0336	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	9.4e-208	719.9
Cone10ag0307	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	9.4e-208	719.9
Cone19ag0481	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	2.1e-207	718.8
Cone5ag0269	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.0	3.0e-206	714.9
Cone1ag1283	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.0	6.8e-206	713.8
Cone9ag1264	.	1	377	Cytoskeleton Gene Families	AT1G49240	78.8	3.0e-177	618.6
Cone6ag1317	.	1	376	Cytoskeleton Gene Families	AT1G49240	79.0	1.1e-174	610.1
Cone5ag1152	.	1	253	Cytoskeleton Gene Families	AT1G49240	90.1	3.2e-131	465.7
Cone5ag1153	.	1	103	Cytoskeleton Gene Families	AT1G49240	92.2	3.2e-54	209.9
Cone10ag0079	.	1	99	Cytoskeleton Gene Families	AT1G49240	88.9	2.0e-48	190.7
Cone9ag1250	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.9	1.7e-217	752.3
Cone12ag0043	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.7	8.5e-217	750.0
Cone8ag0044	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.1	1.2e-215	746.1
Cone8ag0048	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.1	1.2e-215	746.1
Cone3ag0092	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.6	2.3e-214	741.9
Cone13ag0532	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	5.7e-213	737.3
Cone1ag1283	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	7.5e-213	736.9
Cone3ag0336	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.3e-212	736.1
Cone5ag0269	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.3e-212	736.1
Cone10ag0307	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.3e-212	736.1
Cone19ag0481	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.2	1.1e-211	733.0
Cone1ag0645	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.0	7.0e-211	730.3
Cone9ag1264	.	1	377	Cytoskeleton Gene Families	AT5G09810	83.6	4.3e-184	641.3
Cone6ag1317	.	1	376	Cytoskeleton Gene Families	AT5G09810	83.5	8.3e-180	627.1
Cone5ag1152	.	1	253	Cytoskeleton Gene Families	AT5G09810	93.3	9.0e-134	474.2
Cone5ag1153	.	1	103	Cytoskeleton Gene Families	AT5G09810	98.1	2.6e-56	216.9
Cone10ag0079	.	1	99	Cytoskeleton Gene Families	AT5G09810	96.0	1.1e-51	201.4
Cone7ag1163	.	1	131	Cytoskeleton Gene Families	AT2G19760	80.2	8.8e-60	226.9
Cone4ag0756	.	1	131	Cytoskeleton Gene Families	AT2G19760	78.6	1.7e-58	222.6
Cone7ag0705	.	1	131	Cytoskeleton Gene Families	AT2G19760	78.6	2.2e-58	222.2
Cone17ag0127	.	1	129	Cytoskeleton Gene Families	AT2G19760	75.2	7.7e-56	213.8
Cone7ag1162	.	1	133	Cytoskeleton Gene Families	AT2G19760	74.4	1.4e-54	209.5
Cone7ag0704	.	1	133	Cytoskeleton Gene Families	AT2G19760	73.7	2.5e-54	208.8
Cone4ag0755	.	1	133	Cytoskeleton Gene Families	AT2G19760	75.2	7.2e-54	207.2
Cone7ag1163	.	1	131	Cytoskeleton Gene Families	AT4G29350	80.9	1.5e-59	226.1
Cone7ag0705	.	1	131	Cytoskeleton Gene Families	AT4G29350	77.1	2.4e-57	218.8
Cone4ag0756	.	1	131	Cytoskeleton Gene Families	AT4G29350	76.3	1.5e-56	216.1
Cone7ag0704	.	1	133	Cytoskeleton Gene Families	AT4G29350	75.2	1.5e-56	216.1
Cone4ag0755	.	1	133	Cytoskeleton Gene Families	AT4G29350	76.7	4.5e-56	214.5
Cone17ag0127	.	1	131	Cytoskeleton Gene Families	AT4G29350	74.8	1.7e-55	212.6
Cone7ag1162	.	1	133	Cytoskeleton Gene Families	AT4G29350	74.4	4.2e-54	208.0
Cone7ag1163	.	1	87	Cytoskeleton Gene Families	AT5G56600	79.3	2.3e-37	152.1
Cone7ag1162	.	1	133	Cytoskeleton Gene Families	AT4G29340	83.6	6.6e-63	237.3
Cone4ag0755	.	1	133	Cytoskeleton Gene Families	AT4G29340	83.6	8.7e-63	236.9
Cone7ag0704	.	1	133	Cytoskeleton Gene Families	AT4G29340	82.1	1.3e-61	233.0
Cone7ag0705	.	1	131	Cytoskeleton Gene Families	AT4G29340	73.9	1.9e-57	219.2
Cone17ag0127	.	1	131	Cytoskeleton Gene Families	AT4G29340	73.9	1.9e-57	219.2
Cone7ag1163	.	1	131	Cytoskeleton Gene Families	AT4G29340	73.9	9.3e-57	216.9
Cone4ag0756	.	1	131	Cytoskeleton Gene Families	AT4G29340	70.9	1.1e-54	209.9

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0000501	4	6	1	4	4	2	6	4	2	3	2	1	3	3	3	6	2	7	7	3	3	3	2	4	5	5	3	6	4	4	112