Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0762 ATGGGCAGAGCAACAAGGTGGCTGAAGAGCTTATTTGGGATAAGGAAAGACAAGGACCACAGGAAAAATTCAAACTCCAGTGGTCTCTGCCACAACCCGGCGACCATACCGCCTAATATATCAGCAGCCGAAGCTGCCTGGATTAGGTCCTACTACTCAGAAACAGAGAAGGAACAGAGCAAGCATGCGATAGCAGTAGCTGCAGCCACAGCCGCGGCGGCGGACGCTGCGGTTGCAGCCGCGCAAGCGGCTGTGGAAGTAGTGAGACTCACTAGTCACGGCAGAGGCACGCTGTTCGGTGGTGGCCGTGAAAGATGGGCTGCGGTGAAGATTCAAACTCTGTTCAGAGGTTATCTTGCTAGAAAAGCTCTGAGAGCACTAAAAGGATTAGTGAAAATACAAGCACTTGTTAGAGGGTATTTAGTGAGAAAGCAAGCAACAGCAACTCTTCACAGTATGCAAGCTTTGATTAGAGTTCAAGCAAGTGTTCGTTCTCAACGGGCTCGTAAGATTTTCGAGAACGAAATCAACATTAGAACTGATATCCAAGCCAGAAAATCCATGGAGAGATTTGATGATACAAAAAGTGAACACACAGCTTCTTCATTACACAGCAGAAGACTCTCTGCTTCACTTGACACAATAACCACAACAACCACAGCCGCAACAATTAACCCTTTTGACGAAAGCCCGAAAATCGTGGAAGTTGATACAGGTACTAGGCCTAAATCACGGTCCCGTAGGACAACAAACGCTTCACTTTCTGATTTTAGTGACGATCCATATAGCCAATTTCACCAAGCTATATCGTCTCCACTCCCATGTCGAACCCCATCTCGATTATCAATCCCAAATTTCCGGAATTTCCAAGATTCTGATCGGGGCGTACTTGGAGAAGAATATAGATTCTCTACCGCGCAAAGTACACCTAGATTGGCCCCAGCTATTACTCCTTCAAAGAGCCTCTGCGGGGACAATGTTTTTAGAGGGTACATGAATTTTCCGAACTATATGGCAGATACTCAATCTTTTAAGGCGAAATTGAGATCTCATAGTGCACCTAAACAGCGGCCAGAGCCGGGGATAAAGAAAAGGCTTTCGCTTAATGAATTGATGGAGTCTAGAAGTAGTTTCAGTGGGGTCAGGATGCAAAGGTCTTGTTCACAAGTGCAAGAAACTATTAGTTGCAAGAATGCTGTGATGGGTGAGATTCAGAAACCCTCCGAGTATTTGAGGAACCTAGAGAGGAGAGACAGTTACAGAGGACTTGGATGA 1275 46.04 MGRATRWLKSLFGIRKDKDHRKNSNSSGLCHNPATIPPNISAAEAAWIRSYYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVEVVRLTSHGRGTLFGGGRERWAAVKIQTLFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLHSMQALIRVQASVRSQRARKIFENEINIRTDIQARKSMERFDDTKSEHTASSLHSRRLSASLDTITTTTTAATINPFDESPKIVEVDTGTRPKSRSRRTTNASLSDFSDDPYSQFHQAISSPLPCRTPSRLSIPNFRNFQDSDRGVLGEEYRFSTAQSTPRLAPAITPSKSLCGDNVFRGYMNFPNYMADTQSFKAKLRSHSAPKQRPEPGIKKRLSLNELMESRSSFSGVRMQRSCSQVQETISCKNAVMGEIQKPSEYLRNLERRDSYRGLG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4286824 4288795 - Conep04aG0079400.1 Cone4ag0762 435740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0762 424 Pfam Protein of unknown function (DUF4005) 306 380 IPR025064 -
Cone4ag0762 424 SMART iq_5 126 147 IPR000048 GO:0005515(InterPro)
Cone4ag0762 424 SMART iq_5 103 125 IPR000048 GO:0005515(InterPro)
Cone4ag0762 424 SMART iq_5 151 173 IPR000048 GO:0005515(InterPro)
Cone4ag0762 424 ProSiteProfiles IQ motif profile. 128 155 - -
Cone4ag0762 424 Pfam IQ calmodulin-binding motif 105 125 IPR000048 GO:0005515(InterPro)
Cone4ag0762 424 Pfam IQ calmodulin-binding motif 131 145 IPR000048 GO:0005515(InterPro)
Cone4ag0762 424 MobiDBLite consensus disorder prediction 232 257 - -
Cone4ag0762 424 ProSiteProfiles IQ motif profile. 152 181 - -
Cone4ag0762 424 Gene3D - 130 179 - -
Cone4ag0762 424 Gene3D - 46 129 - -
Cone4ag0762 424 ProSiteProfiles IQ motif profile. 104 132 - -
Cone4ag0762 424 PANTHER IQ-DOMAIN 5-RELATED 6 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0762 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0724 Cone-Chr16:8405448 Cone4ag0762 Cone-Chr4:4286824 1.51E-70 dispersed
Cone2ag0310 Cone-Chr2:1597924 Cone4ag0762 Cone-Chr4:4286824 2.80E-70 dispersed
Cone4ag0762 Cone-Chr4:4286824 Cone6ag0754 Cone-Chr6:3835983 2.90E-21 dispersed
Cone17ag0129 Cone-Chr17:665970 Cone4ag0762 Cone-Chr4:4286824 3.38E-75 wgd
Cone20ag1278 Cone-Chr20:8347404 Cone4ag0762 Cone-Chr4:4286824 1.91E-82 wgd
Cone4ag0762 Cone-Chr4:4286824 Cone7ag0718 Cone-Chr7:4218271 2.12E-235 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37