Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0772 ATGACGGATCCTCTCCTAATCAACTCCGAGACCGAGCCGAGCACCACAACTAACTCCTCCTCCTCCTCCTCCTCCTTACCTTCTTCATCTGGATCATCCTTACTAAACCCAATAGCACTAAAACAAACTCGGCCAACCGGCCCAGCGCAGAAGAAACGCCTCAAGAAGCGAACCCGAGATCATGACATCCCCAGAAACGACGCCACCAAGCACCCAGTTTACCGGGGGATCCGAATGCGGGCGTGGGGCAAATGGGTGTCTGAAATTCGCGAGCCAAGAAAGAAAAATCGGATATGGCTAGGTACTTTCTCAACTGCCGAGATGGCTGCCCGGGCCCACGACGTAGCCGCCTTGAGCATCAAAGGCAACTCAGCCATCCTAAACTTCCCTGAACTCGCCGATTCTCTTCCTAGGCCTGCCTCAAAATCTCCTCGAGACGTTCAAGCTGCCGCTGCTAAAGCCGCTTCGATGGTGGTCACTACTTCCGATATTGTCAAGCATTCAATGGTGTCTACATCCTCTACATCATCATTGTCGCAGGATTCATCAGTAGGGTTGGCGCCGGAGGAGCTGAGTGAGATAGTGGAGCTGCCGAGTTTGGCCGGGGCAAGTTATGACTCGCCTGAGTGGCCTAATGAGTTAGTGTTTACGGACTCAGTAGTGGAGGAATGGCTCTGTCCTCATCCCTGGTATCATCAGTGCAATAGCATTAATGGCGATGAGAGTTATGGCCATTTTAGGGATCACATTACAGCAGGGACATTTGAGGCCTTTTTATGGCAACATTAA 789 51.71 MTDPLLINSETEPSTTTNSSSSSSSLPSSSGSSLLNPIALKQTRPTGPAQKKRLKKRTRDHDIPRNDATKHPVYRGIRMRAWGKWVSEIREPRKKNRIWLGTFSTAEMAARAHDVAALSIKGNSAILNFPELADSLPRPASKSPRDVQAAAAKAASMVVTTSDIVKHSMVSTSSTSSLSQDSSVGLAPEELSEIVELPSLAGASYDSPEWPNELVFTDSVVEEWLCPHPWYHQCNSINGDESYGHFRDHITAGTFEAFLWQH 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4457176 4457964 - Conep04aG0080400.1 Cone4ag0772 435750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0772 262 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0772 262 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0772 262 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677(InterPro)
Cone4ag0772 262 Pfam AP2 domain 72 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0772 262 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0772 262 CDD AP2 74 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0772 262 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0772 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 207 IPR051032 -
Cone4ag0772 262 SMART rav1_2 73 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0772 262 MobiDBLite consensus disorder prediction 1 40 - -
Cone4ag0772 262 MobiDBLite consensus disorder prediction 1 72 - -
Cone4ag0772 262 FunFam Ethylene-responsive transcription factor 2 72 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1123 Cone-Chr17:8317270 Cone4ag0772 Cone-Chr4:4457176 4.27E-53 dispersed
Cone4ag0772 Cone-Chr4:4457176 Cone7ag0894 Cone-Chr7:6995942 7.48E-43 dispersed
Cone7ag1544 Cone-Chr7:10651766 Cone4ag0772 Cone-Chr4:4457176 4.36E-20 dispersed
Cone17ag0153 Cone-Chr17:766808 Cone4ag0772 Cone-Chr4:4457176 6.04E-53 wgd
Cone4ag0772 Cone-Chr4:4457176 Cone4ag0949 Cone-Chr4:8070103 1.91E-63 wgd
Cone4ag0772 Cone-Chr4:4457176 Cone7ag1181 Cone-Chr7:8804049 1.27E-63 wgd
Cone4ag0772 Cone-Chr4:4457176 Cone7ag0709 Cone-Chr7:4093784 4.34E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45945 PF00443 UCH 6.90E-51 CL0125 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0772 K09286 - csv:101219745 224.557