Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0778 ATGATTCTCGGGGAACGCCACCGCTCTAATCCAACGGTTCACGTTCCGCCGTGGACGATACTCGATGATCCAACCACTGAGATGTACTCGCCCCTCCCAGTCAGCGGCGTAACCATCAACTCTAGCGGCATTGCTAGCGGCGAAGAGCACTATTCTCCCCGTTACCTTCACGAATCCCTAACGGCCTTCCAGCGATATCTACCGTCTAACGAACCGGACCGCTCGCCCTTTCCAGTCAGTGGCGTAACTGTCAACTCAAGCGGCATTGCTAACGGTGGAGAGCACTGTTCTCCTCGTTACCTGCACGATGCCCTAACTGCCTTCCAGCGTTATCTACCGTCTAACGAACCGGACCCTGAACCCGACCTGGATTTCTTCTCCGGTCCGGATTCCGACGCTCCGATCGATGCCTACTCCTGCGATCAGTTTCGTATGTATGAGTTCAAAGTGCGGCGGTGCGCACGAGGACGATCACATGACTGGACGGATTGTCCGTACGCTCATCCCGGCGAAAAGGCTCGTCGCCGAGATCCTAGGAAGTATCACTACTCAGGCACGGCATGCCCTGAGTTCCGAAAAGGAAACTGCAAGAAAGGCGAGCTCTGCGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTGCATCCAGCTCGGTATAGGACTCAGCCTTGTAAGGACGGAACGAGTTGTCAGAGACGAGTCTGCTTTTTCGCTCACAATCCTGAGCAGCTTAGGGTTCTGCCGTCGCAGAGTTCGCGGACCGTTTCGCCGACGCGGAGTCCGGTGGATTCCTCGCCGCCTATGTCGCCGATGAGTAAGTCAAACTCGATTCATGAAATGGTAGCGTCGCTTCGGATGTTACAGCTCGGTAAGGTTAACAAATCTCAACCTGGTTCATGGACGGCTCATGTCGGATCTCCTAATAACTGTGTCTGGTCTCCAAGAGAGTCTGTGCTCCGACCCGGATTTTATAGCCTTCCAACGACTCCAACCAGGGCTCCGAATCGGTCTGGATTAGGGTATTTGAATCTATGGGAAGAGGATTGTGAGGAGCCGGTGATGGAGCGTGTCGAATCGGGAAGAGGTTTACGGGCTAAGATGTTCGAGAGGCTTTTGAGTAATGAAAACGGTCTCGAGCGGGTTGACCCGGATCCTTCCGGTAGCTGTCCGGATCTTGGGTGGGTTTCGGAGCTTGTGAAGTAA 1200 54.42 MILGERHRSNPTVHVPPWTILDDPTTEMYSPLPVSGVTINSSGIASGEEHYSPRYLHESLTAFQRYLPSNEPDRSPFPVSGVTVNSSGIANGGEHCSPRYLHDALTAFQRYLPSNEPDPEPDLDFFSGPDSDAPIDAYSCDQFRMYEFKVRRCARGRSHDWTDCPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGELCEFAHGVFECWLHPARYRTQPCKDGTSCQRRVCFFAHNPEQLRVLPSQSSRTVSPTRSPVDSSPPMSPMSKSNSIHEMVASLRMLQLGKVNKSQPGSWTAHVGSPNNCVWSPRESVLRPGFYSLPTTPTRAPNRSGLGYLNLWEEDCEEPVMERVESGRGLRAKMFERLLSNENGLERVDPDPSGSCPDLGWVSELVK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4585632 4587050 + Conep04aG0081000.1 Cone4ag0778 435756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0778 399 Gene3D - 182 246 - -
Cone4ag0778 399 ProSiteProfiles Zinc finger C3H1-type profile. 183 209 IPR000571 GO:0046872(InterPro)
Cone4ag0778 399 MobiDBLite consensus disorder prediction 246 272 - -
Cone4ag0778 399 SMART c3hfinal6 217 240 IPR000571 GO:0046872(InterPro)
Cone4ag0778 399 SMART c3hfinal6 182 208 IPR000571 GO:0046872(InterPro)
Cone4ag0778 399 PANTHER UNKEMPT FAMILY MEMBER 73 399 IPR045234 -
Cone4ag0778 399 FunFam Zinc finger CCCH domain-containing protein 66 140 208 - -
Cone4ag0778 399 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 207 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1360 Cone-Chr10:10597164 Cone4ag0778 Cone-Chr4:4585632 3.76E-61 dispersed
Cone3ag1431 Cone-Chr3:33072732 Cone4ag0778 Cone-Chr4:4585632 4.58E-66 dispersed
Cone4ag0778 Cone-Chr4:4585632 Cone4ag1010 Cone-Chr4:8792079 3.73E-144 dispersed
Cone4ag0778 Cone-Chr4:4585632 Cone7ag0724 Cone-Chr7:4337825 7.80E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45948 PF00171 Aldedh 6.00E-144 CL0099 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0778 - - - 0.0