Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0807 | ATGGATGGAGGAGCAGCATACAACCCTCGCACGGTGGAGGAGGTTTTCAGGGACTTCAAGGGACGACGATCCGGCATCATTAAAGCTCTCACTACTCATGTGGAGGAGTTTTTCCAGCGGTGTGATCCTGAGAAAGAGAATCTTTGCCTATATGGATTTCCTAATGAACAGTGGGACGTTAATTTACCTGCTGAAGAAGTTCCTCCCGAGCTTCCAGAGCCTGCGTTAGGCATTAACTTTGCCCGAGATGGGATGCAAGAGAGGGATTGGCTATCACTGGTTGCTGTTCATAGCGACGCATGGTTGCTTGCTGTGGCATTTTACTTTGGTGCAAGATTTGGTTTTGATAAAGCTGATAGAAAACGTCTCTTCTCTATTATAAATGATCTACCTACAATATTCGAGGTTGTGACTGGAAGTGTGAAGAAACAAGGAAAGGAAAAGTCATTGGTATCAAATCACAGTGGTACCAAAACCAAATCCGGCTCAAAAGGGCATGGATCTGAATTGGCAAAGCCAAAAGGGACCCCCAAGGATGAGGAAGAGGTAATGGATGAAGAAGTTGAAGAGGAGCATGGTGAGACATTATGTGGGGCCTGTGGGAAGAACTATGCATCAGATGAGTTCTGGATTTGTTGCGACATTTGTGAGAAATGGTTCCATGGCAAGTGCGTGAAGATCACTCCTGCAAGAGCTGAGCACATCAAGCAATATAAGTGCCCCGCATGCACCAACAAGCGAGCTCGACCCTAA | 753 | 46.35 | MDGGAAYNPRTVEEVFRDFKGRRSGIIKALTTHVEEFFQRCDPEKENLCLYGFPNEQWDVNLPAEEVPPELPEPALGINFARDGMQERDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFSIINDLPTIFEVVTGSVKKQGKEKSLVSNHSGTKTKSGSKGHGSELAKPKGTPKDEEEVMDEEVEEEHGETLCGACGKNYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACTNKRARP | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5105854 | 5109213 | - | Conep04aG0084000.1 | Cone4ag0807 | 435785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0807 | 250 | SMART | PHD_3 | 196 | 244 | IPR001965 | - | |
Cone4ag0807 | 250 | MobiDBLite | consensus disorder prediction | 165 | 181 | - | - | |
Cone4ag0807 | 250 | SUPERFAMILY | FYVE/PHD zinc finger | 190 | 247 | IPR011011 | - | |
Cone4ag0807 | 250 | FunFam | PHD finger alfin-like protein | 189 | 245 | - | - | |
Cone4ag0807 | 250 | CDD | PHD_AL_plant | 196 | 246 | IPR044104 | - | |
Cone4ag0807 | 250 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
Cone4ag0807 | 250 | ProSitePatterns | Zinc finger PHD-type signature. | 197 | 243 | IPR019786 | - | |
Cone4ag0807 | 250 | ProSiteProfiles | Zinc finger PHD-type profile. | 194 | 246 | IPR019787 | - | |
Cone4ag0807 | 250 | Pfam | PHD-finger | 197 | 243 | IPR019787 | - | |
Cone4ag0807 | 250 | MobiDBLite | consensus disorder prediction | 147 | 188 | - | - | |
Cone4ag0807 | 250 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cone4ag0807 | 250 | PANTHER | CPG BINDING PROTEIN | 7 | 249 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cone4ag0807 | 250 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 245 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag0807 | Cone-Chr4:5105854 | Cone7ag1605 | Cone-Chr7:10940102 | 3.34E-151 | dispersed | |
Cone4ag0041 | Cone-Chr4:221832 | Cone4ag0807 | Cone-Chr4:5105854 | 5.65E-64 | wgd | |
Cone4ag0807 | Cone-Chr4:5105854 | Cone7ag0758 | Cone-Chr7:4685575 | 2.73E-181 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45954 | PF00240 | ubiquitin | 2.70E-19 | CL0072 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0807 | K26274 | - | rcu:8272513 | 431.795 |