Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0807 ATGGATGGAGGAGCAGCATACAACCCTCGCACGGTGGAGGAGGTTTTCAGGGACTTCAAGGGACGACGATCCGGCATCATTAAAGCTCTCACTACTCATGTGGAGGAGTTTTTCCAGCGGTGTGATCCTGAGAAAGAGAATCTTTGCCTATATGGATTTCCTAATGAACAGTGGGACGTTAATTTACCTGCTGAAGAAGTTCCTCCCGAGCTTCCAGAGCCTGCGTTAGGCATTAACTTTGCCCGAGATGGGATGCAAGAGAGGGATTGGCTATCACTGGTTGCTGTTCATAGCGACGCATGGTTGCTTGCTGTGGCATTTTACTTTGGTGCAAGATTTGGTTTTGATAAAGCTGATAGAAAACGTCTCTTCTCTATTATAAATGATCTACCTACAATATTCGAGGTTGTGACTGGAAGTGTGAAGAAACAAGGAAAGGAAAAGTCATTGGTATCAAATCACAGTGGTACCAAAACCAAATCCGGCTCAAAAGGGCATGGATCTGAATTGGCAAAGCCAAAAGGGACCCCCAAGGATGAGGAAGAGGTAATGGATGAAGAAGTTGAAGAGGAGCATGGTGAGACATTATGTGGGGCCTGTGGGAAGAACTATGCATCAGATGAGTTCTGGATTTGTTGCGACATTTGTGAGAAATGGTTCCATGGCAAGTGCGTGAAGATCACTCCTGCAAGAGCTGAGCACATCAAGCAATATAAGTGCCCCGCATGCACCAACAAGCGAGCTCGACCCTAA 753 46.35 MDGGAAYNPRTVEEVFRDFKGRRSGIIKALTTHVEEFFQRCDPEKENLCLYGFPNEQWDVNLPAEEVPPELPEPALGINFARDGMQERDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFSIINDLPTIFEVVTGSVKKQGKEKSLVSNHSGTKTKSGSKGHGSELAKPKGTPKDEEEVMDEEVEEEHGETLCGACGKNYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACTNKRARP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5105854 5109213 - Conep04aG0084000.1 Cone4ag0807 435785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0807 250 SMART PHD_3 196 244 IPR001965 -
Cone4ag0807 250 MobiDBLite consensus disorder prediction 165 181 - -
Cone4ag0807 250 SUPERFAMILY FYVE/PHD zinc finger 190 247 IPR011011 -
Cone4ag0807 250 FunFam PHD finger alfin-like protein 189 245 - -
Cone4ag0807 250 CDD PHD_AL_plant 196 246 IPR044104 -
Cone4ag0807 250 MobiDBLite consensus disorder prediction 150 164 - -
Cone4ag0807 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Cone4ag0807 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Cone4ag0807 250 Pfam PHD-finger 197 243 IPR019787 -
Cone4ag0807 250 MobiDBLite consensus disorder prediction 147 188 - -
Cone4ag0807 250 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone4ag0807 250 PANTHER CPG BINDING PROTEIN 7 249 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone4ag0807 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 245 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0807 Cone-Chr4:5105854 Cone7ag1605 Cone-Chr7:10940102 3.34E-151 dispersed
Cone4ag0041 Cone-Chr4:221832 Cone4ag0807 Cone-Chr4:5105854 5.65E-64 wgd
Cone4ag0807 Cone-Chr4:5105854 Cone7ag0758 Cone-Chr7:4685575 2.73E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45954 PF00240 ubiquitin 2.70E-19 CL0072 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0807 K26274 - rcu:8272513 431.795