Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0813 ATGAAAGGCGGTAGAAGTGAGGCGCAGGCAACAAACGATGTCGTTTTGCAGATTGTTGCGACCAATGCAACAGTGGCGGCAAGTAATGTGTCCGCCGCAGATTCAGAACCTACTGCCATACTCGCAGAAGGCTCCTACTCATTCGCTCGTAATTCTCAAGCTGGGGCTAAAGATCCAAATCTCGACCTTACAGATATGATCAAACCGAGTTCTCCTTCTCCAGATTTTAACTTAGCGAGTCCGACTCCTAATAAGCCTCCGAAATTCCCTACTGAGTCCATAACTAGGCGCAGGCTGCTTTCTCGATCATCATTTACGAAGCCAAAATCAAGGTTAGTGGAGTCTCCATATCCTGGTAACTCGATTTTGGCTGAAGAAAAGGCAAAGACCAAGTCTAATTCAGGATCACCTTACCGGAATTCTCCAAAGTTAGCTTCTTCTACAAGCAGAGTTACAGTTTCTACACCGAAAGAATCCTTGAGATCGACTCCTATAACCCCTAGAACGTCGCTGATTGGATCCCCTTTTGTTGATGAAGAAGACGAAGAAGAAGTGTACAAAACTGCAGATATTAAAGTGAAAGAAATTACAGGTAAGAAGTTGAAGAAGGGGTTTTATATTGAATGGATTGCATTTGTTTACATAATGGCGTGTTTGGTTTCTAGCTTAACTGTAAACAAGGTTAAAGAAAGAGAGATTTGGGGATTGAAAATATGGAGATGGTCTGTCTTGGTCCTGGTAATTTTCTGTGGTAGATTGTTTTCCATTTGGTTTATTAACTGTCTTGTTTTTTTGATTGAAATGAACTTTTTGCTTAAGAAGAAGGTTCTGTATTTCGTTTATGGCTTGAGGAAGAGTGTTATAGTTTTCATATGGTTAGGTTTGGTTCTTTTAGCATGGGGTCTGTTATTTGATCATAGTAGTAACAGGTCGAAGAAAATGACCGATATTTTGAATCATATCACTAGGGGCCTTGCTTCATTTCTTATTGGGGCAGCAATATGGCTAGTGAAGACATTTTTAGTGAAGTTATTGGCTTCTTCTTTCCAATGTACGAGATTCTTTGATAGGATTCAAGAGTCTATCTTTCATCAGTATATACTTCGGACCCTTTCTGGTCCTCCATTGGTAGAGATGGCAGAGAAGTTTGGGAGGACACCAAGTACAGGGCAGTTGAGCTTTAGGAATCTGAAAAAGGAAAATAATGATGGGAAAGAAGGCAAAGAGGAGGTGATTGATGTAGACAAGCTTAAGAAAATGAAGCACGAAAAGGTCTCTGCTTGGACCATGAAAGGGCTAGTTGATGTGATAAGGAGTTCGGGATTGTCTACGATCTCTAATACGCTAGAGGATTTTGAGGATGAGGAGGGAGATGAGGAGATCACTAGTGAATGGGAAGCAAAGGCTGCTGCTTATCGAATTTTTAGAAATGTTGCTAAGCCTGGGAGCAAGCATATCGATGAGGAAGACCTCTTGCGCTTTATGAAAAGGGAGGAGGTGGATAATGTGCTTCTATTATTTGAAGGAGCTGTTGAGTCAGGGAAGATCATGCGGAAATCCTTTAAAAACTGGATAGTGAGCGTTTATGTAGAACGAAAATCACTGGCACACTCCTTAAATGATACCAAAACGGCTATAGAGGAGCTGAACAGGCTTGGTTCAGCGATAGTTCTTATTGTGGCAATCATTATATGGTTATGTTTAATGGGATGGCTCACCACCCAAATACTTCTTTTCATATCATCTCAGCTTTTACTTGTGGTTTTCATGTTTGGAAATACGGCAAAAACTGTATTTGAAGCCATCATCTTTGTGTTCGTTATGCACCCGTATGATGTAGGGGACCGTTGTGTCATAGATGGAGTGCAGATGGTTGTTGAAGAGATGAATATATTGACTACAGTCTTCTTGAGATACGACAATGAGAAGATTTTCTATCCGAATTCGGTTCTGGCTACCAAACCCATTAGCAATTTTTACAGGAGCCCAGAAATGAGTGATTCTGTTGAATTTTCTGTTGATGTTTCTACATCAATTGAGACTATAGGCTTCCTAAAATCCAAGATAAAAGGTTACTTGGAAAGCAAGCCACAACACTGGCGTCCGGGGCATAGTGTACAGGTTAAGGAGATAGAGGAAGTGAACAAGATGAAAATGGATCTGTATGTTACCCACACCATTAACTTTCAGAATTACGGTGATAAGAGCAGCCGCAGATCTGAACTAGTCTTAGAGCTAAAGAGAATTTTCGAGGAGCTCGGAATCAAATATCATCTACTACCCCAAGAAGTTTATGTCACCCATCTTAGTTCAGTAACTCCTGGAGTCTTTACTCCACGGAGATGA 2346 40.88 MKGGRSEAQATNDVVLQIVATNATVAASNVSAADSEPTAILAEGSYSFARNSQAGAKDPNLDLTDMIKPSSPSPDFNLASPTPNKPPKFPTESITRRRLLSRSSFTKPKSRLVESPYPGNSILAEEKAKTKSNSGSPYRNSPKLASSTSRVTVSTPKESLRSTPITPRTSLIGSPFVDEEDEEEVYKTADIKVKEITGKKLKKGFYIEWIAFVYIMACLVSSLTVNKVKEREIWGLKIWRWSVLVLVIFCGRLFSIWFINCLVFLIEMNFLLKKKVLYFVYGLRKSVIVFIWLGLVLLAWGLLFDHSSNRSKKMTDILNHITRGLASFLIGAAIWLVKTFLVKLLASSFQCTRFFDRIQESIFHQYILRTLSGPPLVEMAEKFGRTPSTGQLSFRNLKKENNDGKEGKEEVIDVDKLKKMKHEKVSAWTMKGLVDVIRSSGLSTISNTLEDFEDEEGDEEITSEWEAKAAAYRIFRNVAKPGSKHIDEEDLLRFMKREEVDNVLLLFEGAVESGKIMRKSFKNWIVSVYVERKSLAHSLNDTKTAIEELNRLGSAIVLIVAIIIWLCLMGWLTTQILLFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPYDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFSVDVSTSIETIGFLKSKIKGYLESKPQHWRPGHSVQVKEIEEVNKMKMDLYVTHTINFQNYGDKSSRRSELVLELKRIFEELGIKYHLLPQEVYVTHLSSVTPGVFTPRR 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5172087 5175722 + Conep04aG0084600.1 Cone4ag0813 435791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0813 781 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 79 773 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cone4ag0813 781 MobiDBLite consensus disorder prediction 53 164 - -
Cone4ag0813 781 Pfam Mechanosensitive ion channel, beta-domain 603 659 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag0813 781 PIRSF Memb_At2g17000 8 780 IPR016688 -
Cone4ag0813 781 Gene3D - 610 659 IPR023408 -
Cone4ag0813 781 MobiDBLite consensus disorder prediction 126 164 - -
Cone4ag0813 781 FunFam Predicted mechanosensitive ion channel 610 659 - -
Cone4ag0813 781 MobiDBLite consensus disorder prediction 96 110 - -
Cone4ag0813 781 SUPERFAMILY Sm-like ribonucleoproteins 600 659 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0813 Cone-Chr4:5172087 Cone4ag1693 Cone-Chr4:12597498 7.73E-213 dispersed
Cone4ag0813 Cone-Chr4:5172087 Cone7ag0765 Cone-Chr7:4764957 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0813 K22048 - csv:101209209 993.03