Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0830 ATGGCTTTTTCCGTAGCCTCCACTGCCTTTTCAGGCTACCTAACCAGGTCTCAAATTCAGTCATGGCAACTAACCTATAAACGCTACAAGGAGTATCATTACATTCCAGGAAACATTACAGCAAGTATAGGAAGAGGACTAAGAAGTGGTGTGAACGCGACAAAGGGGGTTTCAAGTGTCTGTGAACCTCTTCCTCCTGACAGACCCTTGTGGTTTCCTGGTAGCACTCCTCCCCAGTGGCTTGATGGCAGTCTTCCTGGTGACTTTGGCTTTGACCCACTTGGATTAGGATCTGATCCAGAGTTACTAAAATGGTTTGCACAAGCGGAGCTGATGCATGCAAGATGGGCTATGCTAGCAGTTGCAGGAATTCTGATCCCAGAAGGGCTTGAATCCCTGGGCTTCATTCAAAACTTCTCATGGTACGATGCGGGCTCAAGAGAGTACTTCACCGACCCAACAACCTTACTAGTTGTCCAACTAGCTTTGATGGGCTGGGTCGAAGGGAGAAGATGGGCCGACATGATTAAACCAGGGAGTGTGGACATTGATCTTAAATTGCCTCATAACAAGAAGCCCGTTCCAGATGTGGGCTATCCTGGTGGGTTCTGGTTTGACCCCTACATGTGGGGAAGAGGCTCACCTGAGCCTGTCATGGTTTTGAGGACTAAAGAGATTAAAAATGGCCGTCTTGCTATGCTTGCTTTTGTGGGCTTTGTGTTCCAAGCAATTTATACGGGTCAAGACCCAATTGAGAACTTGATGGCCCATATTGCTGATCCGGGTCACTGCAACATCTTTTCGGCTTTCACATCAGTTTAG 822 47.69 MAFSVASTAFSGYLTRSQIQSWQLTYKRYKEYHYIPGNITASIGRGLRSGVNATKGVSSVCEPLPPDRPLWFPGSTPPQWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILIPEGLESLGFIQNFSWYDAGSREYFTDPTTLLVVQLALMGWVEGRRWADMIKPGSVDIDLKLPHNKKPVPDVGYPGGFWFDPYMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFVFQAIYTGQDPIENLMAHIADPGHCNIFSAFTSV 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5333628 5335462 - Conep04aG0086300.1 Cone4ag0830 435808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0830 273 FunFam Chlorophyll a-b binding protein, chloroplastic 78 263 - -
Cone4ag0830 273 Pfam Chlorophyll A-B binding protein 77 244 IPR022796 -
Cone4ag0830 273 SUPERFAMILY Chlorophyll a-b binding protein 67 272 - -
Cone4ag0830 273 Gene3D Chlorophyll a/b binding protein domain 78 263 - -
Cone4ag0830 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 63 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0924 Cone-Chr10:4844394 Cone4ag0830 Cone-Chr4:5333628 9.13E-41 dispersed
Cone3ag0950 Cone-Chr3:4942721 Cone4ag0830 Cone-Chr4:5333628 1.97E-39 dispersed
Cone4ag0830 Cone-Chr4:5333628 Cone8ag0754 Cone-Chr8:7634588 2.49E-106 dispersed
Cone4ag0830 Cone-Chr4:5333628 Cone13ag0367 Cone-Chr13:3363953 1.03E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0830 K08908 - vvi:100268126 432.95