Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0835 ATGGTGAAGAAATTAGCAGGTACTCAAAAAAAGCCCGACAGCACGTCAACCCAGCGAACCGAAACGGTCAGATTCAAAGGAGTCCGTAAGAGGAATTGGGGAAAATGGGTTTCAGAAATCCGTCGGCCCAACAGTAGGGAACGAATCTGGTTGGGTTCATACGACACGCCTGAGAAGGCTGCCCGAGCTTTCGACGCTGCCCTTTTTTGCTTACGTGGCCGGTCAGCCAAATTCAATTTCCCCAACAACCCGCCGGAAATACCCGGCGGTTGTTCACTTACTCCGGCGGAGATTCAAACCGCCGCTGCCCGGTTTGCGAATTCAGAGCCTCCGAAAGCTCGCAATCAGCATCATGAGCTTACGGTAACGTCGATAGACGATTCGCGTTTGGATTCTCCGTCTCCATCGTGGACGGCCGTTTCAGAAGGGAACTCAGTCCAGCTGGACATGAGTGACGGAATATTCTCGGATCTTTATAGTAGCAGCTTGGATTCGAGCCATTTGGGATGGAATCTTGATTCAATTCCGGATTTTGACGAATTTTTTAACGAGTTACTTACGCCGTCACTTCCTGCCGTTGATTATGGAAATGAAGATTTGGATTTCATTCTTCAAGATTCGTTGCTCTGGAATTTTTAG 639 48.83 MVKKLAGTQKKPDSTSTQRTETVRFKGVRKRNWGKWVSEIRRPNSRERIWLGSYDTPEKAARAFDAALFCLRGRSAKFNFPNNPPEIPGGCSLTPAEIQTAAARFANSEPPKARNQHHELTVTSIDDSRLDSPSPSWTAVSEGNSVQLDMSDGIFSDLYSSSLDSSHLGWNLDSIPDFDEFFNELLTPSLPAVDYGNEDLDFILQDSLLWNF 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5408866 5409858 - Conep04aG0086800.1 Cone4ag0835 435813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0835 212 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0835 212 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Cone4ag0835 212 Pfam AP2 domain 24 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0835 212 MobiDBLite consensus disorder prediction 1 22 - -
Cone4ag0835 212 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677(InterPro)
Cone4ag0835 212 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0835 212 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0835 212 CDD AP2 24 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0835 212 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0835 212 SMART rav1_2 24 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag0835 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 147 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0957 Cone-Chr17:7466654 Cone4ag0835 Cone-Chr4:5408866 5.61E-35 dispersed
Cone17ag1275 Cone-Chr17:9178604 Cone4ag0835 Cone-Chr4:5408866 3.39E-19 dispersed
Cone20ag0301 Cone-Chr20:1345935 Cone4ag0835 Cone-Chr4:5408866 2.66E-35 dispersed
Cone4ag0835 Cone-Chr4:5408866 Cone7ag0709 Cone-Chr7:4093784 2.32E-24 dispersed
Cone9ag0750 Cone-Chr9:3581215 Cone4ag0835 Cone-Chr4:5408866 3.41E-16 dispersed
Cone4ag0835 Cone-Chr4:5408866 Cone7ag0009 Cone-Chr7:51074 7.68E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45956 PF16913 PUNUT 2.90E-07 CL0184 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0835 - - - 0.0