Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0835 | ATGGTGAAGAAATTAGCAGGTACTCAAAAAAAGCCCGACAGCACGTCAACCCAGCGAACCGAAACGGTCAGATTCAAAGGAGTCCGTAAGAGGAATTGGGGAAAATGGGTTTCAGAAATCCGTCGGCCCAACAGTAGGGAACGAATCTGGTTGGGTTCATACGACACGCCTGAGAAGGCTGCCCGAGCTTTCGACGCTGCCCTTTTTTGCTTACGTGGCCGGTCAGCCAAATTCAATTTCCCCAACAACCCGCCGGAAATACCCGGCGGTTGTTCACTTACTCCGGCGGAGATTCAAACCGCCGCTGCCCGGTTTGCGAATTCAGAGCCTCCGAAAGCTCGCAATCAGCATCATGAGCTTACGGTAACGTCGATAGACGATTCGCGTTTGGATTCTCCGTCTCCATCGTGGACGGCCGTTTCAGAAGGGAACTCAGTCCAGCTGGACATGAGTGACGGAATATTCTCGGATCTTTATAGTAGCAGCTTGGATTCGAGCCATTTGGGATGGAATCTTGATTCAATTCCGGATTTTGACGAATTTTTTAACGAGTTACTTACGCCGTCACTTCCTGCCGTTGATTATGGAAATGAAGATTTGGATTTCATTCTTCAAGATTCGTTGCTCTGGAATTTTTAG | 639 | 48.83 | MVKKLAGTQKKPDSTSTQRTETVRFKGVRKRNWGKWVSEIRRPNSRERIWLGSYDTPEKAARAFDAALFCLRGRSAKFNFPNNPPEIPGGCSLTPAEIQTAAARFANSEPPKARNQHHELTVTSIDDSRLDSPSPSWTAVSEGNSVQLDMSDGIFSDLYSSSLDSSHLGWNLDSIPDFDEFFNELLTPSLPAVDYGNEDLDFILQDSLLWNF | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5408866 | 5409858 | - | Conep04aG0086800.1 | Cone4ag0835 | 435813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0835 | 212 | Gene3D | AP2/ERF domain | 23 | 82 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag0835 | 212 | FunFam | Ethylene-responsive transcription factor 2 | 24 | 82 | - | - | |
Cone4ag0835 | 212 | Pfam | AP2 domain | 24 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag0835 | 212 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cone4ag0835 | 212 | SUPERFAMILY | DNA-binding domain | 25 | 82 | IPR016177 | GO:0003677(InterPro) | |
Cone4ag0835 | 212 | PRINTS | Ethylene responsive element binding protein signature | 47 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag0835 | 212 | PRINTS | Ethylene responsive element binding protein signature | 25 | 36 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag0835 | 212 | CDD | AP2 | 24 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag0835 | 212 | ProSiteProfiles | AP2/ERF domain profile. | 24 | 81 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag0835 | 212 | SMART | rav1_2 | 24 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag0835 | 212 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 18 | 147 | IPR051032 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0957 | Cone-Chr17:7466654 | Cone4ag0835 | Cone-Chr4:5408866 | 5.61E-35 | dispersed | |
Cone17ag1275 | Cone-Chr17:9178604 | Cone4ag0835 | Cone-Chr4:5408866 | 3.39E-19 | dispersed | |
Cone20ag0301 | Cone-Chr20:1345935 | Cone4ag0835 | Cone-Chr4:5408866 | 2.66E-35 | dispersed | |
Cone4ag0835 | Cone-Chr4:5408866 | Cone7ag0709 | Cone-Chr7:4093784 | 2.32E-24 | dispersed | |
Cone9ag0750 | Cone-Chr9:3581215 | Cone4ag0835 | Cone-Chr4:5408866 | 3.41E-16 | dispersed | |
Cone4ag0835 | Cone-Chr4:5408866 | Cone7ag0009 | Cone-Chr7:51074 | 7.68E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45956 | PF16913 | PUNUT | 2.90E-07 | CL0184 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0835 | - | - | - | 0.0 |