Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0836 ATGGCGACTACTCAGCTCACAGCTTCCACTATCTCCGTGAGGCGCATGTCTTCATTTGAAGGTCTTCGACCTTCCGCGGCGAATTTTTCTCCCGCAGTTGACCATGTCAGAATTGGCGGTCTGACTCAGAGGTTTCGCGGCCTAGCTGTCAAAGCTGCGACCGTCGTTGCTCCTAAGTACACATCGATCAAGCCTTTGGGAGATAGAGTTCTGGTGAAGATTAAAACTGCAGAGGAAAAAACCAAAGGTGGTATCTTACTTCCAACCACAGCTCAATCTAAACCACAGGGAGGAGAGGTTGTTGCTGTTGGAGAAGGCAAGTCAATTGGAAAGACCAAAGTGGATATTAGCGTAGAGACTGGAACCCAAGTTGTGTACTCCAAATATGCCGGGACTGAGGTGGAGTTGAATGGTTCAAAGCATCTTATTCTTAAAGAGGATGATATTGTTGGTGTTCTAGAAACTGATGACGTAAAGGATCTTAAACCCCATAATGACAGAGTCTTAATTAAGGTTGCAGAGGCAGAGGAGAAGACAGCAGGAGGATTGTTGTTGACAGAGGCGACCAAGGAGAAGCCTTCCATCGGAACAATTATAGCAGTGGGTCCTGGTCCTCTTGACGAAGAAGGGAACAGAAAACCGTTATCAGTTTCCCAAGGGAACACTGTAATCTACTCAAAGTATGCAGGAAATGAGTTCAAGGGCAAAGATGGTTCCGACTACATTGCCTTGAGGGTGTCTGATGTTATCGCTGTGCTATCTTCTTAG 768 46.35 MATTQLTASTISVRRMSSFEGLRPSAANFSPAVDHVRIGGLTQRFRGLAVKAATVVAPKYTSIKPLGDRVLVKIKTAEEKTKGGILLPTTAQSKPQGGEVVAVGEGKSIGKTKVDISVETGTQVVYSKYAGTEVELNGSKHLILKEDDIVGVLETDDVKDLKPHNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTIIAVGPGPLDEEGNRKPLSVSQGNTVIYSKYAGNEFKGKDGSDYIALRVSDVIAVLSS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5419523 5421354 + Conep04aG0086900.1 Cone4ag0836 435814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0836 255 SUPERFAMILY GroES-like 61 154 IPR011032 -
Cone4ag0836 255 PIRSF Cpn21 1 254 IPR017416 GO:0006457(InterPro)|GO:0046914(InterPro)|GO:1901671(InterPro)
Cone4ag0836 255 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 55 251 IPR020818 GO:0005524(InterPro)|GO:0005759(PANTHER)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0009536(PANTHER)|GO:0044183(InterPro)|GO:0046872(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Cone4ag0836 255 CDD cpn10 62 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 FunFam 20 kDa chaperonin, chloroplastic 56 155 - -
Cone4ag0836 255 FunFam 10 kDa chaperonin 158 255 - -
Cone4ag0836 255 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 Gene3D GroES chaperonin 156 255 IPR037124 GO:0006457(InterPro)
Cone4ag0836 255 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457(InterPro)
Cone4ag0836 255 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 CDD cpn10 161 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 SUPERFAMILY GroES-like 160 253 IPR011032 -
Cone4ag0836 255 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cone4ag0836 255 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 SMART Cpn10_2 62 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone4ag0836 255 SMART Cpn10_2 160 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0836 Cone-Chr4:5419523 Cone7ag0777 Cone-Chr7:4955399 2.42E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0836 K04078 - mdm:103400913 393.66