Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0837 | ATGAAAGCACCTACCAATGGTTTTCTGACTAATGCTGGAGAAGGAGAAAGAAAGAGTATCAATTCAGAGCTATGGCATGCTTGTGCCGGCCCTCTGGTATCTTTACCTTCGGTCGGAAGTCTCGTAGTATACTTCGCTCAAGGCCACAGCGAACAAGTTGCAGCATCAATGCAAAAGGAGACCGATTTCATACCCAACTACCCGAATCTCCCTTCCAAGTTGATTTGCATGCTTCATAATCTCACATTACATGCTGATCCTGAAACGGACGAGGTGTATGCTCAGATGACACTTCAGCCTGTAACCAAATATGACAAGGACGCCTTGCTGGCGACTGACTTGGGGCTCAAGCAAGGCAGGCAACCTGCTGAGTTTTTCTGTAAAACTCTCACAGCCAGTGATACAAGCACTCATGGTGGATTTTCCGTTCCAAGACGAGCTGCTGAGAAGATCTTCCCACCATTAGATTTTTCTATGCAACCTCCTGCTCAGGAACTTGTAGCTAGAGATTTACATGACAATTCATGGACGTTTAGACATATTTATCGCGGCCAGCCTAAAAGGCATCTGCTTACAACTGGTTGGAGTGTCTTTGTAAGCACCAAACGTCTCTTTGCAGGAGATTCTGTTCTCTTTATAAGGGATGAAAAATCACAGCTTCTATTAGGTACGAGACGTGCTAATAGACAGCAGCCTGCTTTGTCGTCATCAGTCATTTCAAGTGATAGCATGCACATTGGAATTCTAGCTGCTGCTGCTCATGCTGCTGCTAATAATAGCCCCTTTACTATATTTTACAACCCAAGGACCAGTCCTTCTGAGTTTGTGATTTCATTGGCAAAGTACAATAAAGCAATGTACACCCAGATTTCGCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGATTCAGGGGTGAGAAGATACATGGGTACTGTAACTGGTATTAGTGATTTGGATTCTGTTCGCTGGAAAAATTCACAGTGGAGAAATCTTCAGGTGGGATGGGATGAATCAGCGGCTGGTGAAAGGCCAAGCCGAGTATCAATATGGGAAATTGATCCTGTAATAACTCCGTTCTACATATGTCCACCTCCGTTTTTCAGACCAAAGTTCCCAAAACAATCTGGGATCCCAGATGATGAGTCCGATATGGAGAAGGCTTTCAAACGAGCCATGCCCTGGCTTGGAGATGACTTTGGGTTCAAGGATACCCTTCCGGGCTTAAGTCTAGTCCAGTGGATGAGCATGCAGCAGCAACAAAATAATCAGTTTCCTTCCAATCAATCTGGATTTTCCCCGTCCATACTCTCTCCTTTGAATAACTTCAACCCGGATGATCCCTCCAAGTTACTGAGTTTCCAGGGCCCGCCAAATCTCCAGTATAACAACAAACCAAACCAAGTGAACCAACTACAACCGCCGCAATTATTACAGAACCCCATAAACCAACAAACTCAGAAATTGACCGAACAGCAGCTGAGTCAACCGTCTCAGTTAAACAATGCTGTTGTTTCATCAGTCAACCAACCAGTTATGTGCTCTCAGCTTCAGCAACAGCAGCTAGCTAAGATTATTCCATCCCATTTGATATCTTCACCGCAAGATTCTTCACACTTCCAGCAACAGATCGAGCAGCAGCCTATCTCCTTACCAATGCAGCAGCAGCAGATGCAAGCGCAGTTATTGCAACAGAGCCTTTCACAGAGAATGCAGAGAGCGCCACATCAGATGCTGTCTGAGCAACAAATACAGTTACAACTGTTACAAAGGTCGCAGCATCAGCAACAACAGCATCAGCAGCAGCACCAGCAGCAACAACAATTACTCTCCCAACAACAACAGCATCAGCAGCAGCAACAATTACTCTCCCAACAACAACAGCATCAGCAGCAGCAACAGTTACTCTCCCAAGCGGGTCCAAACTTTCCACCTCAGCTGCCACATCAACAGCAGACGCAGGCCCATCAGCAAAACCAGCAATTACCGCACTTAGCCCAGCAACAACAGATGAACTCAAATAGCTTTCCAGCAGAGAAGCTTGTCAACAACACAAACATGTGCCCGACTTCTGGCCCTATACAAACTCACCAGATTCCTCCTGTGGCCCAATCCCAACCTCTATCCCAACCCCAGTTTAAACCGCTCAATGCAATAAGAGGCCATTCTGGTCTGACAGATGGAGATGCTCCATCATGTTCAACCTCCCCTTCCGCCAACAATTCCCTGGTCTCACCACCAAATTTTACAAACAGAAACCAACAAGGGTCCATGAGTCTAGCTGGTGATTCATTTATTGAACCATCAAGCAATATGCTTCAAGAGCTTCTACAAACGTCAGAAAACCGAGTCAAACATGACCTGGTCAACCAAAAGGGACAAGACCAACTAAAGTACAAAGGACCCATCTCAGACCCATTGGAAGCATCCTCTTCCGGAACATCATATTGTCTAGATGCAAGCACGATCCATCAGACTTTCCCTCTCCCTACTTTCTGTTTGGAAACAAATGATGTTCAATCCCATCCTCGGAATAATCTTCCATTTGCAGCAGGTAATCTTGATGGGTTCAATAATCCAGATAACACTTTATTGTCAAGAGGGTACGACTCACAGAAAGATCTTCAGAACTTACTTTCCAACTATGGAGGCACAGCAAGAGACATAGAAACAGAGCTTTCCACTGCTGATATCAGTCCTCAGTCCCTTGGAGTGCCCCAAAACATGTCTTTCAAGCCCAGTTGCTCAAATGACGTTACCATAAATGAAACTGCAGTTTTGAATGGTGGAATGTGGACAAACCAGTCTCAAAGAATGCGAACATATACAAAGGTTCAAAAGCGGGGATCTGTAGGGAGATGTATCGACATTACACGCTACAAAGGATACGATGAACTCAGGAACGATCTGGCGCGCATGTTTGGGATTGAAGGGCAGCTAGAAAATCCATTAAGGACTGAGTGGAAGCTTGTTTATGTAGATCATGAAAATGACATACTTCTTGTAGGAGATGATCCATGGGAAGATTTCGTAAGCTGTGTTCAGAGCATAAAGATACTTTCATTAGCTGAAGTTCAAAGGATGAGCCTGGATGGATATTTGGGTCATATTCAACAAGTCTCTAACCAAGCTTGTAGTGGTACCGACAGTGGAAATGCGTGGAGAGGACAGTTTGATGACAATTCTGCCGCCTCTTTCAATCGATGA | 3210 | 44.86 | MKAPTNGFLTNAGEGERKSINSELWHACAGPLVSLPSVGSLVVYFAQGHSEQVAASMQKETDFIPNYPNLPSKLICMLHNLTLHADPETDEVYAQMTLQPVTKYDKDALLATDLGLKQGRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGTRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRTSPSEFVISLAKYNKAMYTQISLGMRFRMMFETEDSGVRRYMGTVTGISDLDSVRWKNSQWRNLQVGWDESAAGERPSRVSIWEIDPVITPFYICPPPFFRPKFPKQSGIPDDESDMEKAFKRAMPWLGDDFGFKDTLPGLSLVQWMSMQQQQNNQFPSNQSGFSPSILSPLNNFNPDDPSKLLSFQGPPNLQYNNKPNQVNQLQPPQLLQNPINQQTQKLTEQQLSQPSQLNNAVVSSVNQPVMCSQLQQQQLAKIIPSHLISSPQDSSHFQQQIEQQPISLPMQQQQMQAQLLQQSLSQRMQRAPHQMLSEQQIQLQLLQRSQHQQQQHQQQHQQQQQLLSQQQQHQQQQQLLSQQQQHQQQQQLLSQAGPNFPPQLPHQQQTQAHQQNQQLPHLAQQQQMNSNSFPAEKLVNNTNMCPTSGPIQTHQIPPVAQSQPLSQPQFKPLNAIRGHSGLTDGDAPSCSTSPSANNSLVSPPNFTNRNQQGSMSLAGDSFIEPSSNMLQELLQTSENRVKHDLVNQKGQDQLKYKGPISDPLEASSSGTSYCLDASTIHQTFPLPTFCLETNDVQSHPRNNLPFAAGNLDGFNNPDNTLLSRGYDSQKDLQNLLSNYGGTARDIETELSTADISPQSLGVPQNMSFKPSCSNDVTINETAVLNGGMWTNQSQRMRTYTKVQKRGSVGRCIDITRYKGYDELRNDLARMFGIEGQLENPLRTEWKLVYVDHENDILLVGDDPWEDFVSCVQSIKILSLAEVQRMSLDGYLGHIQQVSNQACSGTDSGNAWRGQFDDNSAASFNR | 1069 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5421395 | 5427249 | - | Conep04aG0087000.1 | Cone4ag0837 | 435815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0837 | 1069 | ProSiteProfiles | B3 DNA-binding domain profile. | 126 | 228 | IPR003340 | GO:0003677(InterPro) | |
Cone4ag0837 | 1069 | MobiDBLite | consensus disorder prediction | 729 | 766 | - | - | |
Cone4ag0837 | 1069 | Gene3D | - | 289 | 359 | - | - | |
Cone4ag0837 | 1069 | ProSiteProfiles | PB1 domain profile. | 941 | 1028 | IPR053793 | - | |
Cone4ag0837 | 1069 | Gene3D | - | 124 | 227 | IPR015300 | - | |
Cone4ag0837 | 1069 | FunFam | Auxin response factor | 936 | 1030 | - | - | |
Cone4ag0837 | 1069 | SUPERFAMILY | DNA-binding pseudobarrel domain | 117 | 255 | IPR015300 | - | |
Cone4ag0837 | 1069 | Gene3D | - | 936 | 1030 | - | - | |
Cone4ag0837 | 1069 | CDD | B3_DNA | 125 | 218 | IPR003340 | GO:0003677(InterPro) | |
Cone4ag0837 | 1069 | SUPERFAMILY | CAD & PB1 domains | 956 | 1020 | - | - | |
Cone4ag0837 | 1069 | FunFam | Auxin response factor | 289 | 361 | - | - | |
Cone4ag0837 | 1069 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 1032 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone4ag0837 | 1069 | Pfam | AUX/IAA family | 936 | 1026 | IPR033389 | - | |
Cone4ag0837 | 1069 | MobiDBLite | consensus disorder prediction | 421 | 473 | - | - | |
Cone4ag0837 | 1069 | FunFam | Auxin response factor | 124 | 228 | - | - | |
Cone4ag0837 | 1069 | MobiDBLite | consensus disorder prediction | 790 | 812 | - | - | |
Cone4ag0837 | 1069 | Coils | Coil | 590 | 610 | - | - | |
Cone4ag0837 | 1069 | MobiDBLite | consensus disorder prediction | 632 | 714 | - | - | |
Cone4ag0837 | 1069 | Pfam | Auxin response factor | 252 | 334 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone4ag0837 | 1069 | SMART | B3_2 | 126 | 228 | IPR003340 | GO:0003677(InterPro) | |
Cone4ag0837 | 1069 | Pfam | B3 DNA binding domain | 126 | 227 | IPR003340 | GO:0003677(InterPro) | |
Cone4ag0837 | 1069 | MobiDBLite | consensus disorder prediction | 632 | 766 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0327 | Cone-Chr16:4148175 | Cone4ag0837 | Cone-Chr4:5421395 | 3.61E-281 | dispersed | |
Cone2ag0660 | Cone-Chr2:31602299 | Cone4ag0837 | Cone-Chr4:5421395 | 1.02E-278 | dispersed | |
Cone4ag0837 | Cone-Chr4:5421395 | Cone5ag1564 | Cone-Chr5:10893332 | 9.40E-190 | dispersed | |
Cone7ag0776 | Cone-Chr7:4949876 | Cone4ag0837 | Cone-Chr4:5421395 | 0 | transposed | |
Cone4ag0837 | Cone-Chr4:5421395 | Cone7ag0007 | Cone-Chr7:41810 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45957 | PF14008 | Metallophos_C | 4.10E-12 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0837 | K14486 | - | csv:101210917 | 835.484 |