Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0837 ATGAAAGCACCTACCAATGGTTTTCTGACTAATGCTGGAGAAGGAGAAAGAAAGAGTATCAATTCAGAGCTATGGCATGCTTGTGCCGGCCCTCTGGTATCTTTACCTTCGGTCGGAAGTCTCGTAGTATACTTCGCTCAAGGCCACAGCGAACAAGTTGCAGCATCAATGCAAAAGGAGACCGATTTCATACCCAACTACCCGAATCTCCCTTCCAAGTTGATTTGCATGCTTCATAATCTCACATTACATGCTGATCCTGAAACGGACGAGGTGTATGCTCAGATGACACTTCAGCCTGTAACCAAATATGACAAGGACGCCTTGCTGGCGACTGACTTGGGGCTCAAGCAAGGCAGGCAACCTGCTGAGTTTTTCTGTAAAACTCTCACAGCCAGTGATACAAGCACTCATGGTGGATTTTCCGTTCCAAGACGAGCTGCTGAGAAGATCTTCCCACCATTAGATTTTTCTATGCAACCTCCTGCTCAGGAACTTGTAGCTAGAGATTTACATGACAATTCATGGACGTTTAGACATATTTATCGCGGCCAGCCTAAAAGGCATCTGCTTACAACTGGTTGGAGTGTCTTTGTAAGCACCAAACGTCTCTTTGCAGGAGATTCTGTTCTCTTTATAAGGGATGAAAAATCACAGCTTCTATTAGGTACGAGACGTGCTAATAGACAGCAGCCTGCTTTGTCGTCATCAGTCATTTCAAGTGATAGCATGCACATTGGAATTCTAGCTGCTGCTGCTCATGCTGCTGCTAATAATAGCCCCTTTACTATATTTTACAACCCAAGGACCAGTCCTTCTGAGTTTGTGATTTCATTGGCAAAGTACAATAAAGCAATGTACACCCAGATTTCGCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGATTCAGGGGTGAGAAGATACATGGGTACTGTAACTGGTATTAGTGATTTGGATTCTGTTCGCTGGAAAAATTCACAGTGGAGAAATCTTCAGGTGGGATGGGATGAATCAGCGGCTGGTGAAAGGCCAAGCCGAGTATCAATATGGGAAATTGATCCTGTAATAACTCCGTTCTACATATGTCCACCTCCGTTTTTCAGACCAAAGTTCCCAAAACAATCTGGGATCCCAGATGATGAGTCCGATATGGAGAAGGCTTTCAAACGAGCCATGCCCTGGCTTGGAGATGACTTTGGGTTCAAGGATACCCTTCCGGGCTTAAGTCTAGTCCAGTGGATGAGCATGCAGCAGCAACAAAATAATCAGTTTCCTTCCAATCAATCTGGATTTTCCCCGTCCATACTCTCTCCTTTGAATAACTTCAACCCGGATGATCCCTCCAAGTTACTGAGTTTCCAGGGCCCGCCAAATCTCCAGTATAACAACAAACCAAACCAAGTGAACCAACTACAACCGCCGCAATTATTACAGAACCCCATAAACCAACAAACTCAGAAATTGACCGAACAGCAGCTGAGTCAACCGTCTCAGTTAAACAATGCTGTTGTTTCATCAGTCAACCAACCAGTTATGTGCTCTCAGCTTCAGCAACAGCAGCTAGCTAAGATTATTCCATCCCATTTGATATCTTCACCGCAAGATTCTTCACACTTCCAGCAACAGATCGAGCAGCAGCCTATCTCCTTACCAATGCAGCAGCAGCAGATGCAAGCGCAGTTATTGCAACAGAGCCTTTCACAGAGAATGCAGAGAGCGCCACATCAGATGCTGTCTGAGCAACAAATACAGTTACAACTGTTACAAAGGTCGCAGCATCAGCAACAACAGCATCAGCAGCAGCACCAGCAGCAACAACAATTACTCTCCCAACAACAACAGCATCAGCAGCAGCAACAATTACTCTCCCAACAACAACAGCATCAGCAGCAGCAACAGTTACTCTCCCAAGCGGGTCCAAACTTTCCACCTCAGCTGCCACATCAACAGCAGACGCAGGCCCATCAGCAAAACCAGCAATTACCGCACTTAGCCCAGCAACAACAGATGAACTCAAATAGCTTTCCAGCAGAGAAGCTTGTCAACAACACAAACATGTGCCCGACTTCTGGCCCTATACAAACTCACCAGATTCCTCCTGTGGCCCAATCCCAACCTCTATCCCAACCCCAGTTTAAACCGCTCAATGCAATAAGAGGCCATTCTGGTCTGACAGATGGAGATGCTCCATCATGTTCAACCTCCCCTTCCGCCAACAATTCCCTGGTCTCACCACCAAATTTTACAAACAGAAACCAACAAGGGTCCATGAGTCTAGCTGGTGATTCATTTATTGAACCATCAAGCAATATGCTTCAAGAGCTTCTACAAACGTCAGAAAACCGAGTCAAACATGACCTGGTCAACCAAAAGGGACAAGACCAACTAAAGTACAAAGGACCCATCTCAGACCCATTGGAAGCATCCTCTTCCGGAACATCATATTGTCTAGATGCAAGCACGATCCATCAGACTTTCCCTCTCCCTACTTTCTGTTTGGAAACAAATGATGTTCAATCCCATCCTCGGAATAATCTTCCATTTGCAGCAGGTAATCTTGATGGGTTCAATAATCCAGATAACACTTTATTGTCAAGAGGGTACGACTCACAGAAAGATCTTCAGAACTTACTTTCCAACTATGGAGGCACAGCAAGAGACATAGAAACAGAGCTTTCCACTGCTGATATCAGTCCTCAGTCCCTTGGAGTGCCCCAAAACATGTCTTTCAAGCCCAGTTGCTCAAATGACGTTACCATAAATGAAACTGCAGTTTTGAATGGTGGAATGTGGACAAACCAGTCTCAAAGAATGCGAACATATACAAAGGTTCAAAAGCGGGGATCTGTAGGGAGATGTATCGACATTACACGCTACAAAGGATACGATGAACTCAGGAACGATCTGGCGCGCATGTTTGGGATTGAAGGGCAGCTAGAAAATCCATTAAGGACTGAGTGGAAGCTTGTTTATGTAGATCATGAAAATGACATACTTCTTGTAGGAGATGATCCATGGGAAGATTTCGTAAGCTGTGTTCAGAGCATAAAGATACTTTCATTAGCTGAAGTTCAAAGGATGAGCCTGGATGGATATTTGGGTCATATTCAACAAGTCTCTAACCAAGCTTGTAGTGGTACCGACAGTGGAAATGCGTGGAGAGGACAGTTTGATGACAATTCTGCCGCCTCTTTCAATCGATGA 3210 44.86 MKAPTNGFLTNAGEGERKSINSELWHACAGPLVSLPSVGSLVVYFAQGHSEQVAASMQKETDFIPNYPNLPSKLICMLHNLTLHADPETDEVYAQMTLQPVTKYDKDALLATDLGLKQGRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGTRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRTSPSEFVISLAKYNKAMYTQISLGMRFRMMFETEDSGVRRYMGTVTGISDLDSVRWKNSQWRNLQVGWDESAAGERPSRVSIWEIDPVITPFYICPPPFFRPKFPKQSGIPDDESDMEKAFKRAMPWLGDDFGFKDTLPGLSLVQWMSMQQQQNNQFPSNQSGFSPSILSPLNNFNPDDPSKLLSFQGPPNLQYNNKPNQVNQLQPPQLLQNPINQQTQKLTEQQLSQPSQLNNAVVSSVNQPVMCSQLQQQQLAKIIPSHLISSPQDSSHFQQQIEQQPISLPMQQQQMQAQLLQQSLSQRMQRAPHQMLSEQQIQLQLLQRSQHQQQQHQQQHQQQQQLLSQQQQHQQQQQLLSQQQQHQQQQQLLSQAGPNFPPQLPHQQQTQAHQQNQQLPHLAQQQQMNSNSFPAEKLVNNTNMCPTSGPIQTHQIPPVAQSQPLSQPQFKPLNAIRGHSGLTDGDAPSCSTSPSANNSLVSPPNFTNRNQQGSMSLAGDSFIEPSSNMLQELLQTSENRVKHDLVNQKGQDQLKYKGPISDPLEASSSGTSYCLDASTIHQTFPLPTFCLETNDVQSHPRNNLPFAAGNLDGFNNPDNTLLSRGYDSQKDLQNLLSNYGGTARDIETELSTADISPQSLGVPQNMSFKPSCSNDVTINETAVLNGGMWTNQSQRMRTYTKVQKRGSVGRCIDITRYKGYDELRNDLARMFGIEGQLENPLRTEWKLVYVDHENDILLVGDDPWEDFVSCVQSIKILSLAEVQRMSLDGYLGHIQQVSNQACSGTDSGNAWRGQFDDNSAASFNR 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5421395 5427249 - Conep04aG0087000.1 Cone4ag0837 435815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0837 1069 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Cone4ag0837 1069 MobiDBLite consensus disorder prediction 729 766 - -
Cone4ag0837 1069 Gene3D - 289 359 - -
Cone4ag0837 1069 ProSiteProfiles PB1 domain profile. 941 1028 IPR053793 -
Cone4ag0837 1069 Gene3D - 124 227 IPR015300 -
Cone4ag0837 1069 FunFam Auxin response factor 936 1030 - -
Cone4ag0837 1069 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
Cone4ag0837 1069 Gene3D - 936 1030 - -
Cone4ag0837 1069 CDD B3_DNA 125 218 IPR003340 GO:0003677(InterPro)
Cone4ag0837 1069 SUPERFAMILY CAD & PB1 domains 956 1020 - -
Cone4ag0837 1069 FunFam Auxin response factor 289 361 - -
Cone4ag0837 1069 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1032 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone4ag0837 1069 Pfam AUX/IAA family 936 1026 IPR033389 -
Cone4ag0837 1069 MobiDBLite consensus disorder prediction 421 473 - -
Cone4ag0837 1069 FunFam Auxin response factor 124 228 - -
Cone4ag0837 1069 MobiDBLite consensus disorder prediction 790 812 - -
Cone4ag0837 1069 Coils Coil 590 610 - -
Cone4ag0837 1069 MobiDBLite consensus disorder prediction 632 714 - -
Cone4ag0837 1069 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone4ag0837 1069 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
Cone4ag0837 1069 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
Cone4ag0837 1069 MobiDBLite consensus disorder prediction 632 766 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0327 Cone-Chr16:4148175 Cone4ag0837 Cone-Chr4:5421395 3.61E-281 dispersed
Cone2ag0660 Cone-Chr2:31602299 Cone4ag0837 Cone-Chr4:5421395 1.02E-278 dispersed
Cone4ag0837 Cone-Chr4:5421395 Cone5ag1564 Cone-Chr5:10893332 9.40E-190 dispersed
Cone7ag0776 Cone-Chr7:4949876 Cone4ag0837 Cone-Chr4:5421395 0 transposed
Cone4ag0837 Cone-Chr4:5421395 Cone7ag0007 Cone-Chr7:41810 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45957 PF14008 Metallophos_C 4.10E-12 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0837 K14486 - csv:101210917 835.484