Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0844 ATGATGTTTCCTTCCCAAGGATCTTCTAGGCACACTTGTAGTCTTCTTGCTGTCACTTGTGGAAGTTTAACCGAAGATAAGCGTAAGAAGGATGTTGTTGATGATCAACCGAGATATCCCTTTCCAGAATTGGCTTCATCAGGCCGTTTGGAGGTTCAGGTTCTGACAAGTCCAAGCAAAGATGAATTTAGTCGAGTTGTGGAATCATATCAACCAAACTTTGTGTATTTGCAAGGGGTGCAACTGGAGAATGATGAAGTGGGGTCTTTAGTTTGGGGAGATGTCGATTTTTCACCTGTAGATGCTATATGTGATCTGTTTCGTACACCTTTGCCTACCACTGTTTATTTGGAAATCCCAAATGGAGAGGAATTGGCTGAGGCACTTCACTTTAAGGGAATTCCTTATGTGATATATTGGAAGGGCACATTCTCTCAGTATGCTGCTTGCCATTTCTGTAATGCATTGCTTTCGGTGGTTCAAAGCTCATCTACTCATACATGGGATGCATTTCAACTTGCACATGCTTCCTTTAGGCTTTACTGTTTGCAAGGCAAATATGTTCTTCCTAGAAATTCCAATCGAGTAAGCATTGAGCAGGGCCCACATCTTCTTGGGGAACATTCAAAGATACATGTAGAACTCCCTGAAATAGACCCCAGTGAAGATGAAGATAGCTCTCTAGGTGCACTTCCTGCCATAAATATTCACGACGAAGAAGTGAACATGAGGTTTCTTATATGTGGAGTGCCCTCTACATTGGATTCATCCCTACTTGAATCTCTGGAAGATGGTCTCACTGCCCTCTTGAACATTGAGGTGCGTGGGGGCAAGCTTCACAGCAAGTTCAGTGCCCCTCCACCCCCTCTTCATGCGGGGACATTTTCTCGTGGTGTCGTGACTATGAGATGTGATATATCAACCTCTAGTTTGGCCCACATTTCACTTCTTGTCTCAGGTAGTGCACAAACTTGTTTTGATGATCAGCTATTGGAAAATCATATTAAAAACGAAATTATTGAAAAGTGCCCACTAGTTCATGCACTTTCTAATTCTAATGGAAACAAACTTCCTTTATCCGAGCCTCGAAGATCCGCTGCAATTGCTTGTGGGGCCACAATATTTGAAGTTTGCATGAAGGTGCCTCAATGGGCTTCACAGGTGTTGAGGCAACTTGCACCTGATCTTTCATACCGTAGCTTGGTAGCACTTGGAATAGCAAGCATTCAAGGATTGCCTGTTGCTTCTTTCGAGAGAGATGATACTGAGCGCCTCCTTTTCTTCTGTTCAAGTGAGCAAAAAGAAGTATATTCCGAAAATTTGATTCTTAGAAACAGCCCAAGCTGGTTAAAGCCGCCTGCTCCTAGCAGAAAGAGGTCTGAACTGAGCCAAGGAACTATCCCCAATTCACATAATGGTGTTGAAGATTCAAATGCTCATTCCACCAGAAGAATAGAAGAAGAGAACAAAGAGACTCCATTGACTAATGGCTTCAAGACACCCTTACCTCCGGCCAGGCAAAGATTGAAAATAGCTGCCATGAGACCTATTCCTCATGTTCACCGTCATAAAATGACACCCTTCTCGGGATTGACTGAGGCAGAAGGGCCCGATGGAGGTCAAGTTAAGGCTATGGTACCTGTCGTGACTCCTGTAAAGCATGTCGTTACGGGGTCCACATCTTCAACTCATCGGAAATCTTTCTCAAGCTCATCTCAGTCCAAGCAGATTATCTCCTTGAACCCATTACCTTTGAAGAAACATGGTTGTGGCAGAATCCAAATACAGGCTTGTTCTGAGGAAGAGTTTTTGAAGGATGTGATGCAGTTTCTAATTCTTCGAGGACATAATCGGCTCATTCCTCGAGGTGGGCTTGCAGAGTTTCCGGATGCCATACTTAATGGGAAGCGTCTTGACTTGTACAACTTGTACAAAGAGGTGGTCACTAGAGGCGGCTTTCATGTTGGGAATGGCATTAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTATACCATGACAAATAGAATGACGGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTATCTTCTAGAATATGAATTGGCCCATGATGATGTAGATGGAGAGTGTTGTTTGCTATGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGCGGGATTTGTGGTGAGTGGGCCCACTTTGGCTGTGACAGACGACAGGGTCTCGGTGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATACGTATGTCCACCCTGTAGCATTACAAGTTGGAAGAAAAAATCGCAAAAAATCACAAATGGGTATCCTCAAGGCTTAATAGCATCAAGAGCATTGTGA 2355 43.61 MMFPSQGSSRHTCSLLAVTCGSLTEDKRKKDVVDDQPRYPFPELASSGRLEVQVLTSPSKDEFSRVVESYQPNFVYLQGVQLENDEVGSLVWGDVDFSPVDAICDLFRTPLPTTVYLEIPNGEELAEALHFKGIPYVIYWKGTFSQYAACHFCNALLSVVQSSSTHTWDAFQLAHASFRLYCLQGKYVLPRNSNRVSIEQGPHLLGEHSKIHVELPEIDPSEDEDSSLGALPAINIHDEEVNMRFLICGVPSTLDSSLLESLEDGLTALLNIEVRGGKLHSKFSAPPPPLHAGTFSRGVVTMRCDISTSSLAHISLLVSGSAQTCFDDQLLENHIKNEIIEKCPLVHALSNSNGNKLPLSEPRRSAAIACGATIFEVCMKVPQWASQVLRQLAPDLSYRSLVALGIASIQGLPVASFERDDTERLLFFCSSEQKEVYSENLILRNSPSWLKPPAPSRKRSELSQGTIPNSHNGVEDSNAHSTRRIEEENKETPLTNGFKTPLPPARQRLKIAAMRPIPHVHRHKMTPFSGLTEAEGPDGGQVKAMVPVVTPVKHVVTGSTSSTHRKSFSSSSQSKQIISLNPLPLKKHGCGRIQIQACSEEEFLKDVMQFLILRGHNRLIPRGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPPCSITSWKKKSQKITNGYPQGLIASRAL 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5560215 5575777 + Conep04aG0087700.1 Cone4ag0844 435822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0844 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 780 IPR042293 -
Cone4ag0844 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Cone4ag0844 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Cone4ag0844 784 MobiDBLite consensus disorder prediction 448 502 - -
Cone4ag0844 784 SUPERFAMILY FYVE/PHD zinc finger 700 766 IPR011011 -
Cone4ag0844 784 SMART ARID_2 594 697 - -
Cone4ag0844 784 CDD ARID 599 697 - -
Cone4ag0844 784 SUPERFAMILY ARID-like 598 712 IPR036431 GO:0003677(InterPro)
Cone4ag0844 784 Gene3D - 588 707 IPR036431 GO:0003677(InterPro)
Cone4ag0844 784 MobiDBLite consensus disorder prediction 459 476 - -
Cone4ag0844 784 CDD PHD_ARID4_like 707 758 - -
Cone4ag0844 784 MobiDBLite consensus disorder prediction 477 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0844 Cone-Chr4:5560215 Cone7ag0835 Cone-Chr7:6286278 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45958 None None None None Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0844 - - - 0.0