Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0844 ATGATGTTTCCTTCCCAAGGATCTTCTAGGCACACTTGTAGTCTTCTTGCTGTCACTTGTGGAAGTTTAACCGAAGATAAGCGTAAGAAGGATGTTGTTGATGATCAACCGAGATATCCCTTTCCAGAATTGGCTTCATCAGGCCGTTTGGAGGTTCAGGTTCTGACAAGTCCAAGCAAAGATGAATTTAGTCGAGTTGTGGAATCATATCAACCAAACTTTGTGTATTTGCAAGGGGTGCAACTGGAGAATGATGAAGTGGGGTCTTTAGTTTGGGGAGATGTCGATTTTTCACCTGTAGATGCTATATGTGATCTGTTTCGTACACCTTTGCCTACCACTGTTTATTTGGAAATCCCAAATGGAGAGGAATTGGCTGAGGCACTTCACTTTAAGGGAATTCCTTATGTGATATATTGGAAGGGCACATTCTCTCAGTATGCTGCTTGCCATTTCTGTAATGCATTGCTTTCGGTGGTTCAAAGCTCATCTACTCATACATGGGATGCATTTCAACTTGCACATGCTTCCTTTAGGCTTTACTGTTTGCAAGGCAAATATGTTCTTCCTAGAAATTCCAATCGAGTAAGCATTGAGCAGGGCCCACATCTTCTTGGGGAACATTCAAAGATACATGTAGAACTCCCTGAAATAGACCCCAGTGAAGATGAAGATAGCTCTCTAGGTGCACTTCCTGCCATAAATATTCACGACGAAGAAGTGAACATGAGGTTTCTTATATGTGGAGTGCCCTCTACATTGGATTCATCCCTACTTGAATCTCTGGAAGATGGTCTCACTGCCCTCTTGAACATTGAGGTGCGTGGGGGCAAGCTTCACAGCAAGTTCAGTGCCCCTCCACCCCCTCTTCATGCGGGGACATTTTCTCGTGGTGTCGTGACTATGAGATGTGATATATCAACCTCTAGTTTGGCCCACATTTCACTTCTTGTCTCAGGTAGTGCACAAACTTGTTTTGATGATCAGCTATTGGAAAATCATATTAAAAACGAAATTATTGAAAAGTGCCCACTAGTTCATGCACTTTCTAATTCTAATGGAAACAAACTTCCTTTATCCGAGCCTCGAAGATCCGCTGCAATTGCTTGTGGGGCCACAATATTTGAAGTTTGCATGAAGGTGCCTCAATGGGCTTCACAGGTGTTGAGGCAACTTGCACCTGATCTTTCATACCGTAGCTTGGTAGCACTTGGAATAGCAAGCATTCAAGGATTGCCTGTTGCTTCTTTCGAGAGAGATGATACTGAGCGCCTCCTTTTCTTCTGTTCAAGTGAGCAAAAAGAAGTATATTCCGAAAATTTGATTCTTAGAAACAGCCCAAGCTGGTTAAAGCCGCCTGCTCCTAGCAGAAAGAGGTCTGAACTGAGCCAAGGAACTATCCCCAATTCACATAATGGTGTTGAAGATTCAAATGCTCATTCCACCAGAAGAATAGAAGAAGAGAACAAAGAGACTCCATTGACTAATGGCTTCAAGACACCCTTACCTCCGGCCAGGCAAAGATTGAAAATAGCTGCCATGAGACCTATTCCTCATGTTCACCGTCATAAAATGACACCCTTCTCGGGATTGACTGAGGCAGAAGGGCCCGATGGAGGTCAAGTTAAGGCTATGGTACCTGTCGTGACTCCTGTAAAGCATGTCGTTACGGGGTCCACATCTTCAACTCATCGGAAATCTTTCTCAAGCTCATCTCAGTCCAAGCAGATTATCTCCTTGAACCCATTACCTTTGAAGAAACATGGTTGTGGCAGAATCCAAATACAGGCTTGTTCTGAGGAAGAGTTTTTGAAGGATGTGATGCAGTTTCTAATTCTTCGAGGACATAATCGGCTCATTCCTCGAGGTGGGCTTGCAGAGTTTCCGGATGCCATACTTAATGGGAAGCGTCTTGACTTGTACAACTTGTACAAAGAGGTGGTCACTAGAGGCGGCTTTCATGTTGGGAATGGCATTAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTATACCATGACAAATAGAATGACGGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTATCTTCTAGAATATGAATTGGCCCATGATGATGTAGATGGAGAGTGTTGTTTGCTATGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGCGGGATTTGTGGTGAGTGGGCCCACTTTGGCTGTGACAGACGACAGGGTCTCGGTGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATACGTATGTCCACCCTGTAGCATTACAAGTTGGAAGAAAAAATCGCAAAAAATCACAAATGGGTATCCTCAAGGCTTAATAGCATCAAGAGCATTGTGA 2355 43.61 MMFPSQGSSRHTCSLLAVTCGSLTEDKRKKDVVDDQPRYPFPELASSGRLEVQVLTSPSKDEFSRVVESYQPNFVYLQGVQLENDEVGSLVWGDVDFSPVDAICDLFRTPLPTTVYLEIPNGEELAEALHFKGIPYVIYWKGTFSQYAACHFCNALLSVVQSSSTHTWDAFQLAHASFRLYCLQGKYVLPRNSNRVSIEQGPHLLGEHSKIHVELPEIDPSEDEDSSLGALPAINIHDEEVNMRFLICGVPSTLDSSLLESLEDGLTALLNIEVRGGKLHSKFSAPPPPLHAGTFSRGVVTMRCDISTSSLAHISLLVSGSAQTCFDDQLLENHIKNEIIEKCPLVHALSNSNGNKLPLSEPRRSAAIACGATIFEVCMKVPQWASQVLRQLAPDLSYRSLVALGIASIQGLPVASFERDDTERLLFFCSSEQKEVYSENLILRNSPSWLKPPAPSRKRSELSQGTIPNSHNGVEDSNAHSTRRIEEENKETPLTNGFKTPLPPARQRLKIAAMRPIPHVHRHKMTPFSGLTEAEGPDGGQVKAMVPVVTPVKHVVTGSTSSTHRKSFSSSSQSKQIISLNPLPLKKHGCGRIQIQACSEEEFLKDVMQFLILRGHNRLIPRGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPPCSITSWKKKSQKITNGYPQGLIASRAL 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5560215 5575777 + Conep04aG0087700.1 Cone4ag0844 435822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0844 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 780 IPR042293 -
Cone4ag0844 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Cone4ag0844 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Cone4ag0844 784 MobiDBLite consensus disorder prediction 448 502 - -
Cone4ag0844 784 SUPERFAMILY FYVE/PHD zinc finger 700 766 IPR011011 -
Cone4ag0844 784 SMART ARID_2 594 697 - -
Cone4ag0844 784 CDD ARID 599 697 - -
Cone4ag0844 784 SUPERFAMILY ARID-like 598 712 IPR036431 GO:0003677(InterPro)
Cone4ag0844 784 Gene3D - 588 707 IPR036431 GO:0003677(InterPro)
Cone4ag0844 784 MobiDBLite consensus disorder prediction 459 476 - -
Cone4ag0844 784 CDD PHD_ARID4_like 707 758 - -
Cone4ag0844 784 MobiDBLite consensus disorder prediction 477 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0844 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0844 Cone-Chr4:5560215 Cone7ag0835 Cone-Chr7:6286278 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0393 . 25 367 ARID Transcription Factor Family AT1G04880 58.8 5.4e-101 365.5
Cone4ag0406 . 18 364 ARID Transcription Factor Family AT1G04880 57.7 1.9e-98 357.1
Cone8ag0922 . 194 481 ARID Transcription Factor Family AT1G20910 58.0 5.4e-89 325.5
Cone12ag0889 . 189 476 ARID Transcription Factor Family AT1G20910 57.0 8.6e-87 318.2
Cone4ag1987 . 2 312 ARID Transcription Factor Family AT1G76110 64.2 1.4e-109 393.7
Cone7ag1916 . 22 306 ARID Transcription Factor Family AT1G76110 66.1 1.5e-108 390.2
Cone17ag1432 . 1 293 ARID Transcription Factor Family AT1G76110 62.7 7.4e-103 371.3
Cone20ag0052 . 5 293 ARID Transcription Factor Family AT1G76110 63.6 9.6e-103 370.9
Cone8ag0922 . 212 511 ARID Transcription Factor Family AT1G76510 63.5 8.3e-107 384.8
Cone12ag0889 . 207 506 ARID Transcription Factor Family AT1G76510 64.3 8.3e-107 384.8
Cone4ag0844 . 2 780 ARID Transcription Factor Family AT3G43240 62.4 1.5e-281 966.1
Cone7ag0835 . 2 780 ARID Transcription Factor Family AT3G43240 62.7 1.7e-280 962.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45958 None None None None Cone TR