Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0853 ATGATGATGATTTGGAACTGGAAAGGGTTATTTGTGCTCATTAATCTCTGCATTTTGGGATGGAAGCCATGCGCTGTCTATGGAGCCACAGATCCAGCAGATGCTTCTGCTCTAAAGACTTTGTACTCTAGTTTAAACTCACCACCTCAGCTTACCCAATGGAGTTCAACCGGTGACGATCCATGTGGGAAATCTTGGAAAGGAGTCACTTGCTCAGGCTCACGAGTCACCGAAATTGTGATATCTGGTTTAGGACTTTCTGGGTCATCGCTGGGATACCAGCTCACAAGCTTGACATCTTTAACCAACCTAGATGTGAGCAACAACAATCTTGGAGGCGGGATAACTTATCAACTACCACCAAACTTGCTGCAATTAAATCTTGCCCGTAATAACTTTAATGGAGGCATCCCCTATTCTATCTCTCAGATGACTTCACTTAAGTACTTAAATATCAGCCACAATCAGCTTCAGAATCAATTGGATGATGTGTATCGCAACATGCCTTCCCTTTCCACATTGGACCTCTCTTATAACTCTTTGTCGGGTAACCTCCCAAGCACTTTTAGCTCCCTTTCTAGCATGAATACTATGTACTTGGAAAACAACCAGTTAACAGGCACAATAGACATCCTCGCAAATCTTCCCCTTGAAAATCTAAATATTGCAAATAATCGGTTTACTGGCTGGATTCCTGATCAACTGAAGAATATCAATTTACAGAAGGACGGTAACTCTTTTAGTTCCGGGCCAGCACCGCCACCTCCTCCCGGCACACCTCTGGCTACCAAAAACAACAATAATAGAAACTCTGGCAGTAATAACAACCCATCAAGAAGTAGTGGAGGAGGCGGCGGTAAATCTGGAATAGGGGGTGGTGCAATTGCTGGAATTGTAATATCTTTACTTGTAGTTGGAGCTTTAGTAGCATTCTTTCTTGTCAAGAGAAGATCCCGGAAAACAGCCACTGATATCGAAAAGCTTAATCCCAACCTGCCTTTTACACCCCAGGTTCCAGATGAAGAACAAGTAGTGAAGCCATTACAGACTTCTTCCGCATTCAACACAAAGACATTTGATACTAACGCTGCAATAAATCTTAGACCCCCACCTGTGGAGCGTCACAAGTCATTTGATGAGGACGATATTTCAAACAAACCTATTGTTGTCAAGAAGAAGGCTGTCACTGCTCCTATTAATGTGAAATCATATTCGATAGCCGATCTCCAGATGGCAACCGGCAGCTTCAGTGTAGACAACTTCCTGGGTGAGGGGTCCTTTGGACGTGTTTATCGAGCTCAGTTTGATGATGGAAAGGTTCTGGACGTGAAGAAAATAGATTTGTCAGCCCTTACCAGTGACTTGTTTGAAGATTTCACAGAGATTGTATCAAGTATCTCCCAGTTGCATCACCCAAATGTGACAGAATTGGTGGGATATTGCTCAGAGCACAGACAACATCTACTGGTGTATGAATTCCACAAAAATGGCTCCCTCCATGACTTCTTACATTTATCAGATGAATACAGCAAGCCATTGACATGGAATTCTCGTGTCAAAATTGCTTTGGGAACTGCACGTGCTTTAGAGTATCTACATGAAGTTTCATCTCCATCAATTGTTCATAAAAATATAAAGTCAGCCAACATATTACTCGATGGAGAACTCAATCCTCACCTTTCTGATTGTGGTCTGGCAAGCTTCGTGGAAAATTTTGATCAGGGATTGGATGTGGGGTCCGGATATAGTGCCCCTGAGGTTACCATGTCGAGTCAGTATACTCTAAAAAGCGATGTTTATAGCTTTGGAGTAGTCATGTTGGAGCTTCTCAGTGGGCGTAAACCATTTGACAGTTCAAGGCCAAGGGCAGAACAGTCATTGGTTAGGTGGGCTACACCCCAGCTCCATGACATTGATGCTTTGGCCAAGATGGTTGACCCGGCACTCAAAGGGCTCTACCCAGTAAAATCTCTCTCCCGATTTGCCGATGTTATTGCTCTTTGCGTGCAGCCTGAGCCAGAGTTTCGACCACCAATGTCGGAAGTGGTCCAAGCGCTAGTCCGGCTTGTGCAAAGAACAAATATGAGTAAGAGAACTATCGGAAGTGATCAAGGATTATCTCCAAGAACTGGAAATCTGGACGAGGAATCATCTTTTAATTAA 2163 43.6 MMMIWNWKGLFVLINLCILGWKPCAVYGATDPADASALKTLYSSLNSPPQLTQWSSTGDDPCGKSWKGVTCSGSRVTEIVISGLGLSGSSLGYQLTSLTSLTNLDVSNNNLGGGITYQLPPNLLQLNLARNNFNGGIPYSISQMTSLKYLNISHNQLQNQLDDVYRNMPSLSTLDLSYNSLSGNLPSTFSSLSSMNTMYLENNQLTGTIDILANLPLENLNIANNRFTGWIPDQLKNINLQKDGNSFSSGPAPPPPPGTPLATKNNNNRNSGSNNNPSRSSGGGGGKSGIGGGAIAGIVISLLVVGALVAFFLVKRRSRKTATDIEKLNPNLPFTPQVPDEEQVVKPLQTSSAFNTKTFDTNAAINLRPPPVERHKSFDEDDISNKPIVVKKKAVTAPINVKSYSIADLQMATGSFSVDNFLGEGSFGRVYRAQFDDGKVLDVKKIDLSALTSDLFEDFTEIVSSISQLHHPNVTELVGYCSEHRQHLLVYEFHKNGSLHDFLHLSDEYSKPLTWNSRVKIALGTARALEYLHEVSSPSIVHKNIKSANILLDGELNPHLSDCGLASFVENFDQGLDVGSGYSAPEVTMSSQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTIGSDQGLSPRTGNLDEESSFN 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5700963 5707209 + Conep04aG0088600.1 Cone4ag0853 435831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0853 720 Gene3D Ribonuclease Inhibitor 31 276 IPR032675 -
Cone4ag0853 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 494 700 - -
Cone4ag0853 720 PANTHER LEUCINE RICH REPEAT KINASE 2 295 688 IPR051420 -
Cone4ag0853 720 Gene3D Phosphorylase Kinase; domain 1 381 493 - -
Cone4ag0853 720 MobiDBLite consensus disorder prediction 241 285 - -
Cone4ag0853 720 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 379 493 - -
Cone4ag0853 720 ProSiteProfiles Protein kinase domain profile. 416 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0853 720 SUPERFAMILY Protein kinase-like (PK-like) 398 686 IPR011009 -
Cone4ag0853 720 MobiDBLite consensus disorder prediction 698 720 - -
Cone4ag0853 720 CDD STKc_IRAK 422 689 - -
Cone4ag0853 720 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Cone4ag0853 720 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Cone4ag0853 720 Pfam Leucine Rich Repeat 217 237 IPR001611 GO:0005515(InterPro)
Cone4ag0853 720 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Cone4ag0853 720 SMART LRR_typ_2 168 191 IPR003591 -
Cone4ag0853 720 SMART LRR_typ_2 98 126 IPR003591 -
Cone4ag0853 720 SMART LRR_typ_2 144 167 IPR003591 -
Cone4ag0853 720 MobiDBLite consensus disorder prediction 262 283 - -
Cone4ag0853 720 SUPERFAMILY L domain-like 30 237 - -
Cone4ag0853 720 Gene3D Transferase(Phosphotransferase) domain 1 495 706 - -
Cone4ag0853 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 258 - -
Cone4ag0853 720 Pfam Protein tyrosine and serine/threonine kinase 418 686 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0031 Cone-Chr17:205759 Cone4ag0853 Cone-Chr4:5700963 2.65E-230 dispersed
Cone20ag1372 Cone-Chr20:8777652 Cone4ag0853 Cone-Chr4:5700963 5.48E-58 dispersed
Cone4ag0853 Cone-Chr4:5700963 Cone7ag0827 Cone-Chr7:6173636 0 dispersed
Cone4ag0853 Cone-Chr4:5700963 Cone7ag0806 Cone-Chr7:5899040 5.98E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82755 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0853 - - - 0.0