Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0853 ATGATGATGATTTGGAACTGGAAAGGGTTATTTGTGCTCATTAATCTCTGCATTTTGGGATGGAAGCCATGCGCTGTCTATGGAGCCACAGATCCAGCAGATGCTTCTGCTCTAAAGACTTTGTACTCTAGTTTAAACTCACCACCTCAGCTTACCCAATGGAGTTCAACCGGTGACGATCCATGTGGGAAATCTTGGAAAGGAGTCACTTGCTCAGGCTCACGAGTCACCGAAATTGTGATATCTGGTTTAGGACTTTCTGGGTCATCGCTGGGATACCAGCTCACAAGCTTGACATCTTTAACCAACCTAGATGTGAGCAACAACAATCTTGGAGGCGGGATAACTTATCAACTACCACCAAACTTGCTGCAATTAAATCTTGCCCGTAATAACTTTAATGGAGGCATCCCCTATTCTATCTCTCAGATGACTTCACTTAAGTACTTAAATATCAGCCACAATCAGCTTCAGAATCAATTGGATGATGTGTATCGCAACATGCCTTCCCTTTCCACATTGGACCTCTCTTATAACTCTTTGTCGGGTAACCTCCCAAGCACTTTTAGCTCCCTTTCTAGCATGAATACTATGTACTTGGAAAACAACCAGTTAACAGGCACAATAGACATCCTCGCAAATCTTCCCCTTGAAAATCTAAATATTGCAAATAATCGGTTTACTGGCTGGATTCCTGATCAACTGAAGAATATCAATTTACAGAAGGACGGTAACTCTTTTAGTTCCGGGCCAGCACCGCCACCTCCTCCCGGCACACCTCTGGCTACCAAAAACAACAATAATAGAAACTCTGGCAGTAATAACAACCCATCAAGAAGTAGTGGAGGAGGCGGCGGTAAATCTGGAATAGGGGGTGGTGCAATTGCTGGAATTGTAATATCTTTACTTGTAGTTGGAGCTTTAGTAGCATTCTTTCTTGTCAAGAGAAGATCCCGGAAAACAGCCACTGATATCGAAAAGCTTAATCCCAACCTGCCTTTTACACCCCAGGTTCCAGATGAAGAACAAGTAGTGAAGCCATTACAGACTTCTTCCGCATTCAACACAAAGACATTTGATACTAACGCTGCAATAAATCTTAGACCCCCACCTGTGGAGCGTCACAAGTCATTTGATGAGGACGATATTTCAAACAAACCTATTGTTGTCAAGAAGAAGGCTGTCACTGCTCCTATTAATGTGAAATCATATTCGATAGCCGATCTCCAGATGGCAACCGGCAGCTTCAGTGTAGACAACTTCCTGGGTGAGGGGTCCTTTGGACGTGTTTATCGAGCTCAGTTTGATGATGGAAAGGTTCTGGACGTGAAGAAAATAGATTTGTCAGCCCTTACCAGTGACTTGTTTGAAGATTTCACAGAGATTGTATCAAGTATCTCCCAGTTGCATCACCCAAATGTGACAGAATTGGTGGGATATTGCTCAGAGCACAGACAACATCTACTGGTGTATGAATTCCACAAAAATGGCTCCCTCCATGACTTCTTACATTTATCAGATGAATACAGCAAGCCATTGACATGGAATTCTCGTGTCAAAATTGCTTTGGGAACTGCACGTGCTTTAGAGTATCTACATGAAGTTTCATCTCCATCAATTGTTCATAAAAATATAAAGTCAGCCAACATATTACTCGATGGAGAACTCAATCCTCACCTTTCTGATTGTGGTCTGGCAAGCTTCGTGGAAAATTTTGATCAGGGATTGGATGTGGGGTCCGGATATAGTGCCCCTGAGGTTACCATGTCGAGTCAGTATACTCTAAAAAGCGATGTTTATAGCTTTGGAGTAGTCATGTTGGAGCTTCTCAGTGGGCGTAAACCATTTGACAGTTCAAGGCCAAGGGCAGAACAGTCATTGGTTAGGTGGGCTACACCCCAGCTCCATGACATTGATGCTTTGGCCAAGATGGTTGACCCGGCACTCAAAGGGCTCTACCCAGTAAAATCTCTCTCCCGATTTGCCGATGTTATTGCTCTTTGCGTGCAGCCTGAGCCAGAGTTTCGACCACCAATGTCGGAAGTGGTCCAAGCGCTAGTCCGGCTTGTGCAAAGAACAAATATGAGTAAGAGAACTATCGGAAGTGATCAAGGATTATCTCCAAGAACTGGAAATCTGGACGAGGAATCATCTTTTAATTAA 2163 43.6 MMMIWNWKGLFVLINLCILGWKPCAVYGATDPADASALKTLYSSLNSPPQLTQWSSTGDDPCGKSWKGVTCSGSRVTEIVISGLGLSGSSLGYQLTSLTSLTNLDVSNNNLGGGITYQLPPNLLQLNLARNNFNGGIPYSISQMTSLKYLNISHNQLQNQLDDVYRNMPSLSTLDLSYNSLSGNLPSTFSSLSSMNTMYLENNQLTGTIDILANLPLENLNIANNRFTGWIPDQLKNINLQKDGNSFSSGPAPPPPPGTPLATKNNNNRNSGSNNNPSRSSGGGGGKSGIGGGAIAGIVISLLVVGALVAFFLVKRRSRKTATDIEKLNPNLPFTPQVPDEEQVVKPLQTSSAFNTKTFDTNAAINLRPPPVERHKSFDEDDISNKPIVVKKKAVTAPINVKSYSIADLQMATGSFSVDNFLGEGSFGRVYRAQFDDGKVLDVKKIDLSALTSDLFEDFTEIVSSISQLHHPNVTELVGYCSEHRQHLLVYEFHKNGSLHDFLHLSDEYSKPLTWNSRVKIALGTARALEYLHEVSSPSIVHKNIKSANILLDGELNPHLSDCGLASFVENFDQGLDVGSGYSAPEVTMSSQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTIGSDQGLSPRTGNLDEESSFN 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5700963 5707209 + Conep04aG0088600.1 Cone4ag0853 435831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0853 720 Gene3D Ribonuclease Inhibitor 31 276 IPR032675 -
Cone4ag0853 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 494 700 - -
Cone4ag0853 720 PANTHER LEUCINE RICH REPEAT KINASE 2 295 688 IPR051420 -
Cone4ag0853 720 Gene3D Phosphorylase Kinase; domain 1 381 493 - -
Cone4ag0853 720 MobiDBLite consensus disorder prediction 241 285 - -
Cone4ag0853 720 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 379 493 - -
Cone4ag0853 720 ProSiteProfiles Protein kinase domain profile. 416 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0853 720 SUPERFAMILY Protein kinase-like (PK-like) 398 686 IPR011009 -
Cone4ag0853 720 MobiDBLite consensus disorder prediction 698 720 - -
Cone4ag0853 720 CDD STKc_IRAK 422 689 - -
Cone4ag0853 720 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Cone4ag0853 720 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Cone4ag0853 720 Pfam Leucine Rich Repeat 217 237 IPR001611 GO:0005515(InterPro)
Cone4ag0853 720 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Cone4ag0853 720 SMART LRR_typ_2 168 191 IPR003591 -
Cone4ag0853 720 SMART LRR_typ_2 98 126 IPR003591 -
Cone4ag0853 720 SMART LRR_typ_2 144 167 IPR003591 -
Cone4ag0853 720 MobiDBLite consensus disorder prediction 262 283 - -
Cone4ag0853 720 SUPERFAMILY L domain-like 30 237 - -
Cone4ag0853 720 Gene3D Transferase(Phosphotransferase) domain 1 495 706 - -
Cone4ag0853 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 258 - -
Cone4ag0853 720 Pfam Protein tyrosine and serine/threonine kinase 418 686 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0853 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0031 Cone-Chr17:205759 Cone4ag0853 Cone-Chr4:5700963 2.65E-230 dispersed
Cone20ag1372 Cone-Chr20:8777652 Cone4ag0853 Cone-Chr4:5700963 5.48E-58 dispersed
Cone4ag0853 Cone-Chr4:5700963 Cone7ag0827 Cone-Chr7:6173636 0 dispersed
Cone4ag0853 Cone-Chr4:5700963 Cone7ag0806 Cone-Chr7:5899040 5.98E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82755 None None None None Cone PK