Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0869 ATGCATCTCGACATCGTTCATTTGTGGATTGTGATCGGCTTCCTCATCCTTCCAGTTTATTCAAAAACCAAATCCGACGATGTGTCTGCATTGAATGTCATGTATACAAGTTTGAATTCTCCTTCAGAACTTAGTAATTGGAAATCGAGTGGGGGAGATCCATGTGACGACTCTTGGAAAGGAATCAAATGTTCTGGAAATTCTGTCACTGAAATATATTTATCTGATCTTGGACTCAGTGGATCCATGGGCTACCAGCTCGCAAATCTGAAGTCTGTCAAAGTATTTGACTTAAGCAGGAACAAACTCAAGGGTGACATTCCGTATCAACTTCCTCCAAATCTGGAAACCTTAGATCTTTCCGAGAATGAGTTCACTGGCAGTGTGCCTTATTCAATTTCTCAGATGACTCAAATCCAAAACTTAAATCTTGCTAGAAACAAGCTCAGTAACCAACTAAGTGATGTGTTCGCCAAGCTTACTAAACTCAAAAAGATGGATGTCTCGCACAACTCACTGTCAGGAAATTTGCCGCAGAGTATGGAAAAACTCTCTAGCATCAAGACATTGGATTTGCAGGATAACAAATTGACTGGTTCTATCAATGTTCTTGCTCCACTTCCCCTTGAAAACTTGAACGTCGCAAACAACAGGTTCACCGGCTGGATTTCTCCCGAGGTGCAGAGTATTAATAACTTAGACACTGGAGGAAATTCTTGGTCAACTGGACCGGCTCCGCCTCCTCCACCAGGGACAAAAACTATCCATAAACTCACTAACAAAAGTGGTCCGAGCAAGAAGTCCATTGTTGGCGGAGTAATCATTGCTGCGATCGGTCTCGGTGTGTTGATGCTCATCGCACTCACGTTCATTTTACTTGCAAGACGGAGAAGATCTACGCCTTCTTCACATTTTCTTGATGAAGAAGGGCATAGCCAGAGGAGAACATTTACTCCCCTTGCATCTCAAGAACTAACAACTGATGGGCATCCAAATATCCACAAAGACTTTACCGATCCTAAGATCTTTGATTCACCAACTACAATAGATATCAAGCCGTTGCAAAAATCACCTTCAATTGGGCAGAAGACATCATCTTCTACTCGTGCTCAATCCCTTAGCGATAGTGAATTTGCCAAGCGTCTGAGTGCCAGTAGGAGCACCTCAGTCCGATTCGCAGCTTACACTCTAGCAGATTTGCAGTCTACAACAGCTAATTTTGCTCCAAGCCGACTTATAGGAGAGGGATCCATTGGACGTGTTTACAGGGCTAAATATTCTGATGGAAAGGTTTTAGCAGTGAAAAAGATAGACTCCTCGCTTTTCCAAGGCAGAAGAACAGAAGAATTTACGGAAATAGTTGCAAAAATCTCGAAACTTGACCACCCAAACATTGCAGAGCTTTTCGGTTTCTGTTTGGAACAAGGGCATCACATGTTAGTTTACGAGTACTTTAGAAACGGCTCTCTTCATGAGTTTTTGCATGCAGCTGATGATTACAGCAACCCCCTTACTTGGAATACAAGAGTCCGAATTGCTTTGGGGGCAGCTAGGGGTGTTGAGTACCTCCATGAGATTTGTTCACCATGCTTAATTCACAAGAACATCAAGTCGACAAACATTTTGCTTGATATGGAACTTAATCCTCATATTTCCGACTACGGTTTGGCAACTTTTCATCAGCGTACTAGCCAGAACCTTGGGTTAGGATATAATGCTCCAGAGTGCACAACCCCTTCTGCCTATACGGTTAAGAGCGATGTCTACAGTTTTGGAGTCGTGATGTTGGAACTGCTGACAGGTCGGATGCCTTTTGACAGCACAAAAGCGAAAGCAGAACAATGCCTTGTCCGGTGGGCCTCTCCTCTGCTCCATGACCTAGATGCTCTTGGAAGGATGGTCGACCCGGCATTGCGGGGATTGTACCCTCCCAAGTCGCTCTCCCGGTTTGCGGATATCATTGCTCTCTGCGTGCAATCGGAACCTGAATTTCGGCCCCCATTGTCGGAGGTTGTGCAAGCGTTGGTAAGGTTAGTTCAACGCTCCAGCATGAACGTAAGCAAAGAACTTGGAGCGTCTCGTAGGTCGGATGACTACGATGATTGA 2106 44.49 MHLDIVHLWIVIGFLILPVYSKTKSDDVSALNVMYTSLNSPSELSNWKSSGGDPCDDSWKGIKCSGNSVTEIYLSDLGLSGSMGYQLANLKSVKVFDLSRNKLKGDIPYQLPPNLETLDLSENEFTGSVPYSISQMTQIQNLNLARNKLSNQLSDVFAKLTKLKKMDVSHNSLSGNLPQSMEKLSSIKTLDLQDNKLTGSINVLAPLPLENLNVANNRFTGWISPEVQSINNLDTGGNSWSTGPAPPPPPGTKTIHKLTNKSGPSKKSIVGGVIIAAIGLGVLMLIALTFILLARRRRSTPSSHFLDEEGHSQRRTFTPLASQELTTDGHPNIHKDFTDPKIFDSPTTIDIKPLQKSPSIGQKTSSSTRAQSLSDSEFAKRLSASRSTSVRFAAYTLADLQSTTANFAPSRLIGEGSIGRVYRAKYSDGKVLAVKKIDSSLFQGRRTEEFTEIVAKISKLDHPNIAELFGFCLEQGHHMLVYEYFRNGSLHEFLHAADDYSNPLTWNTRVRIALGAARGVEYLHEICSPCLIHKNIKSTNILLDMELNPHISDYGLATFHQRTSQNLGLGYNAPECTTPSAYTVKSDVYSFGVVMLELLTGRMPFDSTKAKAEQCLVRWASPLLHDLDALGRMVDPALRGLYPPKSLSRFADIIALCVQSEPEFRPPLSEVVQALVRLVQRSSMNVSKELGASRRSDDYDD 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6042321 6046891 + Conep04aG0090200.1 Cone4ag0869 435847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0869 701 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 485 689 - -
Cone4ag0869 701 PANTHER LEUCINE RICH REPEAT KINASE 2 266 677 IPR051420 -
Cone4ag0869 701 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 24 251 - -
Cone4ag0869 701 Gene3D Ribonuclease Inhibitor 24 261 IPR032675 -
Cone4ag0869 701 SUPERFAMILY L domain-like 25 241 - -
Cone4ag0869 701 ProSiteProfiles Protein kinase domain profile. 407 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0869 701 SUPERFAMILY Protein kinase-like (PK-like) 387 675 IPR011009 -
Cone4ag0869 701 MobiDBLite consensus disorder prediction 350 372 - -
Cone4ag0869 701 CDD TM_EGFR-like 262 298 - -
Cone4ag0869 701 Gene3D Transferase(Phosphotransferase) domain 1 485 689 - -
Cone4ag0869 701 MobiDBLite consensus disorder prediction 234 254 - -
Cone4ag0869 701 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 372 484 - -
Cone4ag0869 701 ProSiteProfiles Leucine-rich repeat profile. 186 208 IPR001611 GO:0005515(InterPro)
Cone4ag0869 701 Gene3D Phosphorylase Kinase; domain 1 365 484 - -
Cone4ag0869 701 Pfam Protein tyrosine and serine/threonine kinase 411 675 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0869 701 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515(InterPro)
Cone4ag0869 701 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
Cone4ag0869 701 MobiDBLite consensus disorder prediction 322 372 - -
Cone4ag0869 701 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0869 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0021 Cone-Chr1:152551 Cone4ag0869 Cone-Chr4:6042321 1.26E-169 dispersed
Cone4ag0869 Cone-Chr4:6042321 Cone7ag0827 Cone-Chr7:6173636 2.76E-176 dispersed
Cone20ag1372 Cone-Chr20:8777652 Cone4ag0869 Cone-Chr4:6042321 3.68E-47 wgd
Cone4ag0869 Cone-Chr4:6042321 Cone7ag0806 Cone-Chr7:5899040 3.79E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0869 . . . . . . . Blo10g00929 . . . Bpe09g00067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82757 PF01248 Ribosomal_L7Ae 1.20E-26 CL0101 Cone PK