Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0869 ATGCATCTCGACATCGTTCATTTGTGGATTGTGATCGGCTTCCTCATCCTTCCAGTTTATTCAAAAACCAAATCCGACGATGTGTCTGCATTGAATGTCATGTATACAAGTTTGAATTCTCCTTCAGAACTTAGTAATTGGAAATCGAGTGGGGGAGATCCATGTGACGACTCTTGGAAAGGAATCAAATGTTCTGGAAATTCTGTCACTGAAATATATTTATCTGATCTTGGACTCAGTGGATCCATGGGCTACCAGCTCGCAAATCTGAAGTCTGTCAAAGTATTTGACTTAAGCAGGAACAAACTCAAGGGTGACATTCCGTATCAACTTCCTCCAAATCTGGAAACCTTAGATCTTTCCGAGAATGAGTTCACTGGCAGTGTGCCTTATTCAATTTCTCAGATGACTCAAATCCAAAACTTAAATCTTGCTAGAAACAAGCTCAGTAACCAACTAAGTGATGTGTTCGCCAAGCTTACTAAACTCAAAAAGATGGATGTCTCGCACAACTCACTGTCAGGAAATTTGCCGCAGAGTATGGAAAAACTCTCTAGCATCAAGACATTGGATTTGCAGGATAACAAATTGACTGGTTCTATCAATGTTCTTGCTCCACTTCCCCTTGAAAACTTGAACGTCGCAAACAACAGGTTCACCGGCTGGATTTCTCCCGAGGTGCAGAGTATTAATAACTTAGACACTGGAGGAAATTCTTGGTCAACTGGACCGGCTCCGCCTCCTCCACCAGGGACAAAAACTATCCATAAACTCACTAACAAAAGTGGTCCGAGCAAGAAGTCCATTGTTGGCGGAGTAATCATTGCTGCGATCGGTCTCGGTGTGTTGATGCTCATCGCACTCACGTTCATTTTACTTGCAAGACGGAGAAGATCTACGCCTTCTTCACATTTTCTTGATGAAGAAGGGCATAGCCAGAGGAGAACATTTACTCCCCTTGCATCTCAAGAACTAACAACTGATGGGCATCCAAATATCCACAAAGACTTTACCGATCCTAAGATCTTTGATTCACCAACTACAATAGATATCAAGCCGTTGCAAAAATCACCTTCAATTGGGCAGAAGACATCATCTTCTACTCGTGCTCAATCCCTTAGCGATAGTGAATTTGCCAAGCGTCTGAGTGCCAGTAGGAGCACCTCAGTCCGATTCGCAGCTTACACTCTAGCAGATTTGCAGTCTACAACAGCTAATTTTGCTCCAAGCCGACTTATAGGAGAGGGATCCATTGGACGTGTTTACAGGGCTAAATATTCTGATGGAAAGGTTTTAGCAGTGAAAAAGATAGACTCCTCGCTTTTCCAAGGCAGAAGAACAGAAGAATTTACGGAAATAGTTGCAAAAATCTCGAAACTTGACCACCCAAACATTGCAGAGCTTTTCGGTTTCTGTTTGGAACAAGGGCATCACATGTTAGTTTACGAGTACTTTAGAAACGGCTCTCTTCATGAGTTTTTGCATGCAGCTGATGATTACAGCAACCCCCTTACTTGGAATACAAGAGTCCGAATTGCTTTGGGGGCAGCTAGGGGTGTTGAGTACCTCCATGAGATTTGTTCACCATGCTTAATTCACAAGAACATCAAGTCGACAAACATTTTGCTTGATATGGAACTTAATCCTCATATTTCCGACTACGGTTTGGCAACTTTTCATCAGCGTACTAGCCAGAACCTTGGGTTAGGATATAATGCTCCAGAGTGCACAACCCCTTCTGCCTATACGGTTAAGAGCGATGTCTACAGTTTTGGAGTCGTGATGTTGGAACTGCTGACAGGTCGGATGCCTTTTGACAGCACAAAAGCGAAAGCAGAACAATGCCTTGTCCGGTGGGCCTCTCCTCTGCTCCATGACCTAGATGCTCTTGGAAGGATGGTCGACCCGGCATTGCGGGGATTGTACCCTCCCAAGTCGCTCTCCCGGTTTGCGGATATCATTGCTCTCTGCGTGCAATCGGAACCTGAATTTCGGCCCCCATTGTCGGAGGTTGTGCAAGCGTTGGTAAGGTTAGTTCAACGCTCCAGCATGAACGTAAGCAAAGAACTTGGAGCGTCTCGTAGGTCGGATGACTACGATGATTGA 2106 44.49 MHLDIVHLWIVIGFLILPVYSKTKSDDVSALNVMYTSLNSPSELSNWKSSGGDPCDDSWKGIKCSGNSVTEIYLSDLGLSGSMGYQLANLKSVKVFDLSRNKLKGDIPYQLPPNLETLDLSENEFTGSVPYSISQMTQIQNLNLARNKLSNQLSDVFAKLTKLKKMDVSHNSLSGNLPQSMEKLSSIKTLDLQDNKLTGSINVLAPLPLENLNVANNRFTGWISPEVQSINNLDTGGNSWSTGPAPPPPPGTKTIHKLTNKSGPSKKSIVGGVIIAAIGLGVLMLIALTFILLARRRRSTPSSHFLDEEGHSQRRTFTPLASQELTTDGHPNIHKDFTDPKIFDSPTTIDIKPLQKSPSIGQKTSSSTRAQSLSDSEFAKRLSASRSTSVRFAAYTLADLQSTTANFAPSRLIGEGSIGRVYRAKYSDGKVLAVKKIDSSLFQGRRTEEFTEIVAKISKLDHPNIAELFGFCLEQGHHMLVYEYFRNGSLHEFLHAADDYSNPLTWNTRVRIALGAARGVEYLHEICSPCLIHKNIKSTNILLDMELNPHISDYGLATFHQRTSQNLGLGYNAPECTTPSAYTVKSDVYSFGVVMLELLTGRMPFDSTKAKAEQCLVRWASPLLHDLDALGRMVDPALRGLYPPKSLSRFADIIALCVQSEPEFRPPLSEVVQALVRLVQRSSMNVSKELGASRRSDDYDD 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6042321 6046891 + Conep04aG0090200.1 Cone4ag0869 435847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0869 701 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 485 689 - -
Cone4ag0869 701 PANTHER LEUCINE RICH REPEAT KINASE 2 266 677 IPR051420 -
Cone4ag0869 701 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 24 251 - -
Cone4ag0869 701 Gene3D Ribonuclease Inhibitor 24 261 IPR032675 -
Cone4ag0869 701 SUPERFAMILY L domain-like 25 241 - -
Cone4ag0869 701 ProSiteProfiles Protein kinase domain profile. 407 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0869 701 SUPERFAMILY Protein kinase-like (PK-like) 387 675 IPR011009 -
Cone4ag0869 701 MobiDBLite consensus disorder prediction 350 372 - -
Cone4ag0869 701 CDD TM_EGFR-like 262 298 - -
Cone4ag0869 701 Gene3D Transferase(Phosphotransferase) domain 1 485 689 - -
Cone4ag0869 701 MobiDBLite consensus disorder prediction 234 254 - -
Cone4ag0869 701 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 372 484 - -
Cone4ag0869 701 ProSiteProfiles Leucine-rich repeat profile. 186 208 IPR001611 GO:0005515(InterPro)
Cone4ag0869 701 Gene3D Phosphorylase Kinase; domain 1 365 484 - -
Cone4ag0869 701 Pfam Protein tyrosine and serine/threonine kinase 411 675 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0869 701 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515(InterPro)
Cone4ag0869 701 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
Cone4ag0869 701 MobiDBLite consensus disorder prediction 322 372 - -
Cone4ag0869 701 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0021 Cone-Chr1:152551 Cone4ag0869 Cone-Chr4:6042321 1.26E-169 dispersed
Cone4ag0869 Cone-Chr4:6042321 Cone7ag0827 Cone-Chr7:6173636 2.76E-176 dispersed
Cone20ag1372 Cone-Chr20:8777652 Cone4ag0869 Cone-Chr4:6042321 3.68E-47 wgd
Cone4ag0869 Cone-Chr4:6042321 Cone7ag0806 Cone-Chr7:5899040 3.79E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82757 PF01248 Ribosomal_L7Ae 1.20E-26 CL0101 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0869 - - - 0.0