Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag0879 | ATGCAACTTGTATCACATGATGGTCGTAGAGAGGAGGATATGTCTGAAAGTGAACCCATCCTTCAGTCTGAAATCTTGCGAAGGTCTATAGAATCTTCATCCTCCTCTGAGATTACTTCTGTAGAAGAGGACGGTGCTGTTCTTGATGAAGTTGCAGTACATCTTCTAAACGTAGATGAAACTAGTCATCTGGTGAATACAGACCAACCGCAATGCCGTATATGCCTTGACTCTGGAGGGGATGATATTATTGCTCCTTGCTACTGCAAAGGCACACAAAAGTTTGTCCACAGATCATGTCTTGACAATTGGAGGTCCACGAAGGAGGGCTTTGCTTTTGCAAACTGTACAGAGTGCAGGGCATCGTTTATATTGAGAGCGAATGTTCCTCCTGATCGATGGTGGTTGAGATTGAAATTTCAGTTGCTTGTTGCGAGGGATCATGCATTCATTTTTATAATTGTTCAGCTGATTGTTGCATTCCTGGGTGTGTTGGTGTACAAGTTTTATGGAGAGGAACTTAGAGAAATGTTTGGTTATGAAGAACACCCATATGGTTTCTATGCCATGGCAGTTTTAGCAATCATCTTGGTTGGTTTGCTTTATGGTTTCTTCATAGCTATTATATGTGGGCAGAGGATCAATGAACGGCATTACCATGTTCTTGCCAAACAGGAGCTAACGAAGGAATATGTGGTGGAAGATCGAGAGTGTAATAAGAAGCCCCCGGAGCTTGACCCCAATCATATCACCGAGCTAAGGATGTTGGGCCTGTACTGA | 780 | 43.08 | MQLVSHDGRREEDMSESEPILQSEILRRSIESSSSSEITSVEEDGAVLDEVAVHLLNVDETSHLVNTDQPQCRICLDSGGDDIIAPCYCKGTQKFVHRSCLDNWRSTKEGFAFANCTECRASFILRANVPPDRWWLRLKFQLLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRECNKKPPELDPNHITELRMLGLY | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6222422 | 6227706 | - | Conep04aG0091200.1 | Cone4ag0879 | 435857 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag0879 | 259 | SUPERFAMILY | RING/U-box | 66 | 123 | - | - | |
Cone4ag0879 | 259 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cone4ag0879 | 259 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 191 | 259 | - | - | |
Cone4ag0879 | 259 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cone4ag0879 | 259 | Pfam | RING-variant domain | 72 | 119 | IPR011016 | GO:0008270(InterPro) | |
Cone4ag0879 | 259 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 64 | 126 | IPR011016 | GO:0008270(InterPro) | |
Cone4ag0879 | 259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 131 | IPR013083 | - | |
Cone4ag0879 | 259 | SMART | ringv_2 | 71 | 120 | IPR011016 | GO:0008270(InterPro) | |
Cone4ag0879 | 259 | CDD | RING_CH-C4HC3_MARCH | 72 | 120 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag0879 | Cone-Chr4:6222422 | Cone7ag0656 | Cone-Chr7:3420822 | 6.43E-43 | dispersed | |
Cone4ag0879 | Cone-Chr4:6222422 | Cone7ag0811 | Cone-Chr7:6023430 | 1.90E-162 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag0879 | - | - | - | 0.0 |