Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0879 ATGCAACTTGTATCACATGATGGTCGTAGAGAGGAGGATATGTCTGAAAGTGAACCCATCCTTCAGTCTGAAATCTTGCGAAGGTCTATAGAATCTTCATCCTCCTCTGAGATTACTTCTGTAGAAGAGGACGGTGCTGTTCTTGATGAAGTTGCAGTACATCTTCTAAACGTAGATGAAACTAGTCATCTGGTGAATACAGACCAACCGCAATGCCGTATATGCCTTGACTCTGGAGGGGATGATATTATTGCTCCTTGCTACTGCAAAGGCACACAAAAGTTTGTCCACAGATCATGTCTTGACAATTGGAGGTCCACGAAGGAGGGCTTTGCTTTTGCAAACTGTACAGAGTGCAGGGCATCGTTTATATTGAGAGCGAATGTTCCTCCTGATCGATGGTGGTTGAGATTGAAATTTCAGTTGCTTGTTGCGAGGGATCATGCATTCATTTTTATAATTGTTCAGCTGATTGTTGCATTCCTGGGTGTGTTGGTGTACAAGTTTTATGGAGAGGAACTTAGAGAAATGTTTGGTTATGAAGAACACCCATATGGTTTCTATGCCATGGCAGTTTTAGCAATCATCTTGGTTGGTTTGCTTTATGGTTTCTTCATAGCTATTATATGTGGGCAGAGGATCAATGAACGGCATTACCATGTTCTTGCCAAACAGGAGCTAACGAAGGAATATGTGGTGGAAGATCGAGAGTGTAATAAGAAGCCCCCGGAGCTTGACCCCAATCATATCACCGAGCTAAGGATGTTGGGCCTGTACTGA 780 43.08 MQLVSHDGRREEDMSESEPILQSEILRRSIESSSSSEITSVEEDGAVLDEVAVHLLNVDETSHLVNTDQPQCRICLDSGGDDIIAPCYCKGTQKFVHRSCLDNWRSTKEGFAFANCTECRASFILRANVPPDRWWLRLKFQLLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRECNKKPPELDPNHITELRMLGLY 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6222422 6227706 - Conep04aG0091200.1 Cone4ag0879 435857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0879 259 SUPERFAMILY RING/U-box 66 123 - -
Cone4ag0879 259 MobiDBLite consensus disorder prediction 1 20 - -
Cone4ag0879 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 191 259 - -
Cone4ag0879 259 MobiDBLite consensus disorder prediction 1 17 - -
Cone4ag0879 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270(InterPro)
Cone4ag0879 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270(InterPro)
Cone4ag0879 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Cone4ag0879 259 SMART ringv_2 71 120 IPR011016 GO:0008270(InterPro)
Cone4ag0879 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0879 Cone-Chr4:6222422 Cone7ag0656 Cone-Chr7:3420822 6.43E-43 dispersed
Cone4ag0879 Cone-Chr4:6222422 Cone7ag0811 Cone-Chr7:6023430 1.90E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0879 - - - 0.0