Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0888 ATGAGACCAAGTCAACCGCCTCCCACCTCCACCGCAACTCCGACGCCCGCTCGCCGGCCTGGTCGGCGCCAGGATCTAAACCTTCCTCTCCCTCAGCGCAATCCTTTCGTAGCTGTCCCTCTTCCTCTTCCTCCTAACTCCTCCGCCTCCTCCTCCTCTGCCGCCGGCTCCAACTCAGCATCTTCAACCGCCGTGAACCACCGCCAGTTCAGCTTCTCGGAGCTAGATCGAATCAGCCGAATCGGAAGCGGCGCTGGAGGCACGGTCTACAAAGTGATCCACCGTCCGACAGGCCGTCCCTACGCACTAAAGGTGTTCCACGGCTATCACGACGAGGCGGTGAGGCGTCAGATCTGCCGCGAGATCGAGATCCTTCGAGACGTCGATAACCCTTACATCGTCAAATGCCACGATATGTTCGATCAGAATGGAGAGATCCAAGTCCTTCTTGAGTTAATGGACGGCGGATCGTTAGAAGGCACTCACATCCCTCAGGAAAACCTTCTCTCAGATCTGACTCGACAGATCCTCACAGGACTCGCCTACCTCCATCGCCGCCACATCGTCCACCGCGACATCAAGCCATCGAATCTCCTGATCAACCGCCGAAAAGAGGTTAAGATCGCAGATTTCGGTGTCGGACGAATCCTCGAGCAGACTTTGGATGCTTGCAACTCAGCCGTAGGAACCATCGCGTATATGAGTCCGGAGCGGATCAATACGGACCTGAATGAAGGAGTCTACGATGGATATGCTGGAGACATATGGAGTTTAGGAGTGGGCGTATTGGAGTTTCATTTAGGGAAGTTTCCCTTCGGAAATGGGAGGCAAGGAGATTGGGCGAGCTTGATGTCCTCGATTTGCATGTCGCAGCCGCCGGAGGCACCTCCAACGGCTTCGCCGGAGTTTCGGAACTTTATTGCTTGTTGTTTGCAGAGGGATCCAGGGAGGAGATGGCCTGCTGCTCAACTACTGCAACATCCCTTCATACTTCGTAATACAAATCATAATAATGATAGTAACGGAGGTAATCAGAGACGGAGTCATCATCTTCATCATCGGAATCTTCATCACCAGAATCTTCATCAATTACTACCTCCTCCTCCACGCCCAAATCCTTCCTAG 1125 53.6 MRPSQPPPTSTATPTPARRPGRRQDLNLPLPQRNPFVAVPLPLPPNSSASSSSAAGSNSASSTAVNHRQFSFSELDRISRIGSGAGGTVYKVIHRPTGRPYALKVFHGYHDEAVRRQICREIEILRDVDNPYIVKCHDMFDQNGEIQVLLELMDGGSLEGTHIPQENLLSDLTRQILTGLAYLHRRHIVHRDIKPSNLLINRRKEVKIADFGVGRILEQTLDACNSAVGTIAYMSPERINTDLNEGVYDGYAGDIWSLGVGVLEFHLGKFPFGNGRQGDWASLMSSICMSQPPEAPPTASPEFRNFIACCLQRDPGRRWPAAQLLQHPFILRNTNHNNDSNGGNQRRSHHLHHRNLHHQNLHQLLPPPPRPNPS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6361613 6362950 - Conep04aG0092100.1 Cone4ag0888 435866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0888 374 CDD PKc_MAPKK_plant_like 73 330 - -
Cone4ag0888 374 SMART serkin_6 75 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 MobiDBLite consensus disorder prediction 1 64 - -
Cone4ag0888 374 Pfam Protein kinase domain 77 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 Gene3D Phosphorylase Kinase; domain 1 47 154 - -
Cone4ag0888 374 Gene3D Transferase(Phosphotransferase) domain 1 159 355 - -
Cone4ag0888 374 ProSiteProfiles Protein kinase domain profile. 75 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 SUPERFAMILY Protein kinase-like (PK-like) 75 331 IPR011009 -
Cone4ag0888 374 FunFam Dual specificity mitogen-activated protein kinase kinase 60 153 - -
Cone4ag0888 374 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 50 338 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone4ag0888 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 MobiDBLite consensus disorder prediction 44 64 - -
Cone4ag0888 374 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524(InterPro)
Cone4ag0888 374 FunFam Mitogen-activated protein kinase 2 155 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0888 K13413 - - sly:543946 469.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0888 Cone-Chr4:6361613 Cone8ag0019 Cone-Chr8:140232 3.51E-32 dispersed
Cone17ag0025 Cone-Chr17:183156 Cone4ag0888 Cone-Chr4:6361613 7.43E-167 wgd
Cone20ag1378 Cone-Chr20:8798189 Cone4ag0888 Cone-Chr4:6361613 3.54E-172 wgd
Cone4ag0888 Cone-Chr4:6361613 Cone7ag0824 Cone-Chr7:6143218 5.30E-200 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0048 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.7 2.9e-131 465.7
Cone7ag0046 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.4 6.5e-131 464.5
Cone7ag0750 . 20 351 MAP Kinase Kinase Gene Family AT4G26070 62.2 2.1e-121 433.0
Cone7ag1164 . 29 355 MAP Kinase Kinase Gene Family AT4G26070 56.1 3.1e-109 392.5
Cone4ag0048 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.1e-135 480.3
Cone7ag0046 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 6.9e-133 471.1
Cone7ag0750 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 1.8e-120 429.9
Cone7ag1164 . 10 328 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.8e-109 393.3
Cone3ag0716 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.3e-223 773.1
Cone10ag0698 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.2e-221 766.5
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT1G51660 74.5 8.4e-145 510.8
Cone17ag0025 . 76 362 MAP Kinase Kinase Gene Family AT1G51660 81.2 6.1e-135 478.0
Cone7ag0824 . 22 329 MAP Kinase Kinase Gene Family AT1G51660 73.6 9.4e-128 454.1
Cone4ag0888 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 66.8 1.3e-121 433.7
Cone2ag0738 . 49 312 MAP Kinase Kinase Gene Family AT1G51660 53.4 2.0e-77 287.0
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT3G21220 71.3 1.9e-138 489.6
Cone17ag0025 . 76 364 MAP Kinase Kinase Gene Family AT3G21220 79.2 3.4e-135 478.8
Cone7ag0824 . 1 329 MAP Kinase Kinase Gene Family AT3G21220 69.0 2.4e-125 446.0
Cone4ag0888 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.6 6.0e-124 441.4
Cone2ag0738 . 43 314 MAP Kinase Kinase Gene Family AT3G21220 53.7 1.2e-79 294.3
Cone7ag1164 . 1 358 MAP Kinase Kinase Gene Family AT5G56580 83.6 4.3e-170 594.7
Cone4ag0048 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 4.7e-116 415.2
Cone7ag0046 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 2.3e-115 412.9
Cone7ag0750 . 11 340 MAP Kinase Kinase Gene Family AT5G56580 58.4 2.3e-110 396.4
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G18350 62.5 1.0e-106 384.0
Cone17ag0025 . 65 335 MAP Kinase Kinase Gene Family AT1G18350 50.5 1.7e-77 287.0
Cone4ag0888 . 62 330 MAP Kinase Kinase Gene Family AT1G18350 50.7 3.2e-73 272.7
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.4 1.4e-111 400.2
Cone17ag0025 . 79 335 MAP Kinase Kinase Gene Family AT1G73500 51.7 4.4e-78 288.9
Cone4ag0888 . 74 330 MAP Kinase Kinase Gene Family AT1G73500 51.7 1.3e-74 277.3
Cone12ag0478 . 59 335 MAP Kinase Kinase Gene Family AT1G73500 50.9 1.3e-74 277.3
Cone12ag0478 . 1 333 MAP Kinase Kinase Gene Family AT1G32320 53.3 4.8e-85 312.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82759 None None None None Cone PK