Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0888 ATGAGACCAAGTCAACCGCCTCCCACCTCCACCGCAACTCCGACGCCCGCTCGCCGGCCTGGTCGGCGCCAGGATCTAAACCTTCCTCTCCCTCAGCGCAATCCTTTCGTAGCTGTCCCTCTTCCTCTTCCTCCTAACTCCTCCGCCTCCTCCTCCTCTGCCGCCGGCTCCAACTCAGCATCTTCAACCGCCGTGAACCACCGCCAGTTCAGCTTCTCGGAGCTAGATCGAATCAGCCGAATCGGAAGCGGCGCTGGAGGCACGGTCTACAAAGTGATCCACCGTCCGACAGGCCGTCCCTACGCACTAAAGGTGTTCCACGGCTATCACGACGAGGCGGTGAGGCGTCAGATCTGCCGCGAGATCGAGATCCTTCGAGACGTCGATAACCCTTACATCGTCAAATGCCACGATATGTTCGATCAGAATGGAGAGATCCAAGTCCTTCTTGAGTTAATGGACGGCGGATCGTTAGAAGGCACTCACATCCCTCAGGAAAACCTTCTCTCAGATCTGACTCGACAGATCCTCACAGGACTCGCCTACCTCCATCGCCGCCACATCGTCCACCGCGACATCAAGCCATCGAATCTCCTGATCAACCGCCGAAAAGAGGTTAAGATCGCAGATTTCGGTGTCGGACGAATCCTCGAGCAGACTTTGGATGCTTGCAACTCAGCCGTAGGAACCATCGCGTATATGAGTCCGGAGCGGATCAATACGGACCTGAATGAAGGAGTCTACGATGGATATGCTGGAGACATATGGAGTTTAGGAGTGGGCGTATTGGAGTTTCATTTAGGGAAGTTTCCCTTCGGAAATGGGAGGCAAGGAGATTGGGCGAGCTTGATGTCCTCGATTTGCATGTCGCAGCCGCCGGAGGCACCTCCAACGGCTTCGCCGGAGTTTCGGAACTTTATTGCTTGTTGTTTGCAGAGGGATCCAGGGAGGAGATGGCCTGCTGCTCAACTACTGCAACATCCCTTCATACTTCGTAATACAAATCATAATAATGATAGTAACGGAGGTAATCAGAGACGGAGTCATCATCTTCATCATCGGAATCTTCATCACCAGAATCTTCATCAATTACTACCTCCTCCTCCACGCCCAAATCCTTCCTAG 1125 53.6 MRPSQPPPTSTATPTPARRPGRRQDLNLPLPQRNPFVAVPLPLPPNSSASSSSAAGSNSASSTAVNHRQFSFSELDRISRIGSGAGGTVYKVIHRPTGRPYALKVFHGYHDEAVRRQICREIEILRDVDNPYIVKCHDMFDQNGEIQVLLELMDGGSLEGTHIPQENLLSDLTRQILTGLAYLHRRHIVHRDIKPSNLLINRRKEVKIADFGVGRILEQTLDACNSAVGTIAYMSPERINTDLNEGVYDGYAGDIWSLGVGVLEFHLGKFPFGNGRQGDWASLMSSICMSQPPEAPPTASPEFRNFIACCLQRDPGRRWPAAQLLQHPFILRNTNHNNDSNGGNQRRSHHLHHRNLHHQNLHQLLPPPPRPNPS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6361613 6362950 - Conep04aG0092100.1 Cone4ag0888 435866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0888 374 CDD PKc_MAPKK_plant_like 73 330 - -
Cone4ag0888 374 SMART serkin_6 75 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 MobiDBLite consensus disorder prediction 1 64 - -
Cone4ag0888 374 Pfam Protein kinase domain 77 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 Gene3D Phosphorylase Kinase; domain 1 47 154 - -
Cone4ag0888 374 Gene3D Transferase(Phosphotransferase) domain 1 159 355 - -
Cone4ag0888 374 ProSiteProfiles Protein kinase domain profile. 75 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 SUPERFAMILY Protein kinase-like (PK-like) 75 331 IPR011009 -
Cone4ag0888 374 FunFam Dual specificity mitogen-activated protein kinase kinase 60 153 - -
Cone4ag0888 374 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 50 338 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone4ag0888 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag0888 374 MobiDBLite consensus disorder prediction 44 64 - -
Cone4ag0888 374 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524(InterPro)
Cone4ag0888 374 FunFam Mitogen-activated protein kinase 2 155 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0888 Cone-Chr4:6361613 Cone8ag0019 Cone-Chr8:140232 3.51E-32 dispersed
Cone17ag0025 Cone-Chr17:183156 Cone4ag0888 Cone-Chr4:6361613 7.43E-167 wgd
Cone20ag1378 Cone-Chr20:8798189 Cone4ag0888 Cone-Chr4:6361613 3.54E-172 wgd
Cone4ag0888 Cone-Chr4:6361613 Cone7ag0824 Cone-Chr7:6143218 5.30E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82759 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0888 K13413 - sly:543946 469.929