Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag0890 | ATGGATTCGATCAAGTCCTTCAAGGGGTACGGCAAGGTGGATGAGGTGGAAGCACAAGCATTCCGGCGAAAGACTAGGAAGCGTCTGATCATCCTCGTCATCTCCGTTATCATCCTTTTAGCGGCTATAATCGGCGTGGTTGTAGGAACCGTAATACACAAGCGAAACACCTCATCACAACCCTCTAACTCGGTCCCTCCAACCGAGTTAACTCCAGCAGCGTCAATCAAATCTCTCTGCAGTCTGACTCAGTATCCAAATTCCTGCATCTCCTCTCTCCAAAACTCCAACACCACCGATCCTGTACTCCTCTTCAAGCTCTCTCTACGCGTCGCCATTGATGAGATCTCTAAGCTCTCGCTGTATCCTGAAAACCTTATTTCTAACACGAACGAGACTCAGCTCAAGAATGCCCTAATTATCTGCGAAACGCTTCTTGAAGATGCTGTTGATAGACTCAACGATTCGATTTCCTCCATGGAAGTGAGTCAGCAGCCTGGCGAAAAGGTGCTGTCCTCGTCAAAAATCACCGATTTGAAGACCTGGCTCAGCACCGCCATTACTGACCAAGAGACCTGCTTAGACACTCTTCAAGAACTGAACTACACAGCAGTAGTCGAAGATCTGAGAACTGAAATGCAGAACTCTAACGAGTTAGCGAGCAACAGTTTAGCTATCGTGACGAAGATCCTAAGCCTGTTAGTCGATCTTAACATCCCGATCCACCGGAAATTACTCGGATCTGAACCGGATTTCCCAGTCTGGATGAGTTCCGGTGATCGGAGGTTGCTTCAGAAGGATAACTTGACGGCGCACATGACGGTGGCGAAGGACGGAAGCGGAGATTATACAACGATCCGAGATGCGGTAGCGGCGGTGGCGAAGAAGAGCAAAACGAGAATCGTTATACATGTGAAGGAAGGGAAGTACGAAGAGAACGTGATCTTGGATAAGAATAAGTGGAATGTAATGATGTACGGAGAGGGAAAGAAGAAGACCATTGTCACCGGAAGCCTGAACTTCATCGACGGCACTCCCACATTCTCCACCGCCACTTTTGCCGTTGCCGGAAAAGGCTTCATTGCTAAAGACATGAGCTTCGTTAACTCGGCTGGAGCAGCAAAGCACCAGGCAGTGGCATTTAGGTCCGGCTCAGACCTCTCGGTCCTATACCGATGCTCTTTTGATGCCTTCCAAGACACGCTCTATGCCCATTCAAATCGCCAATTCTACAAAGAGTGTGACATAACAGGAACCATCGACTTCATTTTCGGAAATTCTGCAGTTGTCTTCCAGGACTGCCTTATCATGCCTAGACAGCCCTTGTCCAACCAATTCAACACCATAACAGCTCAGGGCAAAAAGGACCCAAATCAAAACACAGGGATTTCAATCCAAAAGTGTTCTTTCACTCCTTTTGGGAGTAATCTTACAGCACCTACTTATCTTGGCAGGCCATGGAAAGACTATTCTACTACGGTCATTATGCAATCTACTATTGAGTCGTTTTTGAACCCATTGGGCTGGAAGGAATGGGTGAGTAATGTTGACCCACCGACTACGATTCTTTATGGTGAGTACCAAAACTCTGGGTCTGGGTCTATTGTGGACGGGAGAGTGAAATGGGCTGGATATAAACCCAGTCTCACGGCTGATGAGGCGGCCAAGTTCACTGTTGGATCTTTCATTCAGGGCAGTGAGTGGTTGCCGGAGACCAGTGTCGCATTTGATGCAAATTTGTGA | 1743 | 47.85 | MDSIKSFKGYGKVDEVEAQAFRRKTRKRLIILVISVIILLAAIIGVVVGTVIHKRNTSSQPSNSVPPTELTPAASIKSLCSLTQYPNSCISSLQNSNTTDPVLLFKLSLRVAIDEISKLSLYPENLISNTNETQLKNALIICETLLEDAVDRLNDSISSMEVSQQPGEKVLSSSKITDLKTWLSTAITDQETCLDTLQELNYTAVVEDLRTEMQNSNELASNSLAIVTKILSLLVDLNIPIHRKLLGSEPDFPVWMSSGDRRLLQKDNLTAHMTVAKDGSGDYTTIRDAVAAVAKKSKTRIVIHVKEGKYEENVILDKNKWNVMMYGEGKKKTIVTGSLNFIDGTPTFSTATFAVAGKGFIAKDMSFVNSAGAAKHQAVAFRSGSDLSVLYRCSFDAFQDTLYAHSNRQFYKECDITGTIDFIFGNSAVVFQDCLIMPRQPLSNQFNTITAQGKKDPNQNTGISIQKCSFTPFGSNLTAPTYLGRPWKDYSTTVIMQSTIESFLNPLGWKEWVSNVDPPTTILYGEYQNSGSGSIVDGRVKWAGYKPSLTADEAAKFTVGSFIQGSEWLPETSVAFDANL | 580 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6423977 | 6427728 | + | Conep04aG0092300.1 | Cone4ag0890 | 435868 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag0890 | 580 | CDD | PMEI-like_3 | 78 | 230 | - | - | |
| Cone4ag0890 | 580 | PANTHER | PECTINESTERASE | 29 | 571 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cone4ag0890 | 580 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 76 | 231 | IPR035513 | - | |
| Cone4ag0890 | 580 | FunFam | Pectinesterase | 72 | 231 | - | - | |
| Cone4ag0890 | 580 | Pfam | Pectinesterase | 273 | 565 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cone4ag0890 | 580 | ProSitePatterns | Pectinesterase signature 2. | 416 | 425 | IPR033131 | - | |
| Cone4ag0890 | 580 | NCBIfam | pectinesterase inhibitor domain | 69 | 230 | IPR006501 | GO:0004857(InterPro) | |
| Cone4ag0890 | 580 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 72 | 230 | IPR035513 | - | |
| Cone4ag0890 | 580 | SMART | PMEI_2 | 71 | 226 | IPR006501 | GO:0004857(InterPro) | |
| Cone4ag0890 | 580 | FunFam | Pectinesterase | 266 | 580 | - | - | |
| Cone4ag0890 | 580 | Pfam | Plant invertase/pectin methylesterase inhibitor | 75 | 226 | IPR006501 | GO:0004857(InterPro) | |
| Cone4ag0890 | 580 | Gene3D | - | 266 | 580 | IPR012334 | - | |
| Cone4ag0890 | 580 | SUPERFAMILY | Pectin lyase-like | 271 | 577 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag0986 | Cone-Chr11:7926614 | Cone4ag0890 | Cone-Chr4:6423977 | 2.57E-144 | dispersed | |
| Cone17ag0034 | Cone-Chr17:222144 | Cone4ag0890 | Cone-Chr4:6423977 | 2.37E-190 | dispersed | |
| Cone18ag0592 | Cone-Chr18:2959618 | Cone4ag0890 | Cone-Chr4:6423977 | 7.63E-156 | dispersed | |
| Cone20ag1369 | Cone-Chr20:8764581 | Cone4ag0890 | Cone-Chr4:6423977 | 1.59E-13 | dispersed | |
| Cone4ag0890 | Cone-Chr4:6423977 | Cone5ag0802 | Cone-Chr5:3450694 | 1.12E-120 | dispersed | |
| Cone4ag0890 | Cone-Chr4:6423977 | Cone4ag0894 | Cone-Chr4:6621834 | 4.77E-111 | proximal | |
| Cone19ag0080 | Cone-Chr19:477425 | Cone4ag0890 | Cone-Chr4:6423977 | 2.81E-11 | transposed | |
| Cone17ag0033 | Cone-Chr17:214851 | Cone4ag0890 | Cone-Chr4:6423977 | 1.24E-121 | wgd | |
| Cone20ag1368 | Cone-Chr20:8762971 | Cone4ag0890 | Cone-Chr4:6423977 | 1.68E-88 | wgd | |
| Cone4ag0890 | Cone-Chr4:6423977 | Cone7ag0832 | Cone-Chr7:6238440 | 3.02E-123 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag0890 | - | - | - | 0.0 |