Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0895 ATGGCTGCTGCTTCCTTAGAGGCGATCCCACTGCGGTCGACGTTGCTACTCCTTTTCATCGTGACTTTATGTCCATGGGTCAATACTAGTACTAGAACCACCCCATTCGCTAATAATGATAATCAATACAATATTTCACAACATGACCATCTTGTTCAGTGGGAGTGCTTGAACGTCCCTACCTCTAATTTCCTCAACTCCGTTACCAAAACCATCGATTCTCTCCGACAGGTCATATCCATCGTCTCTCAATTTTCAAATCTGATCGGGGATTTTCGCCTATCCTCTGCTATTTCTGACTGCCTCGATCTTCTCGATTCGTCTGTCGATGAACTAACACGGTCCATTTCTACGATCAGGAATCGGAAGGCAAAAGATAACAGCACCGGAAATCTGAGCTCTGATCTAAAGACATGGCTAAGCGCCGCCTTGGTCAATCCTGAAACGTGCATGGATGGATTCGAAGGTACGAACGGGATTCTGAAAAGTCTGGTCTCTGCCGGCATTGGTCAGGTCACATCGCTGGTGAGTGACCTTCTTTCTATGGTGGCCTCGAGTTATGGCGATGGCCAATCAGATGCCGCCAGCTGGATCGTTGAGTCGGATGGGGAGGAGAGGAGTAAGTTTATGTTGCGGAGCATGAATGATGTGGGCGTGGATGTGACGGTGGCGGCGGATGGGAGTGGGAATTTCATGAACGTGATGGATGCGGTATTGGCCGCTCCTGATTATAGCATGCGGCGTTATGTGATTTATATCAAGAAAGGTGTATACCGGGAGAACGTGGAGATCAAGAAGAAGAAATGGAACCTTATCATGATTGGAGATGGAATGGATCATACTGTTATTTCGGGTAATAGGAGTTTCGTCGACGGTTGGACAACATTTCGCTCTGCAACATTCGCGGTTAGCGGGAGAGGGTTCATGGCGCGAGACTTGACCATAGAGAACTCTGCCGGACCGGAAAAGCACCAGGCCGTGGCCCTTCGATCGGACTCCGACCTTTCCGTATTCTTCCGGTGTTCTATAAGAGGTTATCAAGACACGCTATACACCCACACCATGCGCCAATTCTACCGTGAGTGTCGAGTCAGCGGCACCGTTGACTTCATATTCGGCGACGGCACTGTCGTTTTCCAGAACTGCCAAATTCTTGCAAGAAACGGCCTGTCTAATCAGAAGAACACGATAACCGCTCAGGGAAGGAAAGACCCAGGTCAAACCACTGGCTTCTCCTTCCAGTTCTGCAACATTTCCGCAGATACGGTACTGGTCAACTCCAGTTCTAGTAATCCGACTTATCTTGGAAGGCCGTGGAAGCAATATTCACGGACCGTTGTCATGCAGTCATACATGAGTGAGTTAATTAAGCCACAGGGATGGCTAGAATGGAATGCTGATTTCGCTCTGGATACTTTGTTTTACGGCGAGTATAACAATTATGGGCCAGGAGCAGGCCTTTCTAGCCGGGTCAAGTGGCCGGGTTATCACGTTTTGAATCAGTCCAGTGAGGCAACTAACTATACAGTGGCCCAGTTTATTCAAGGAAACATGTGGTTGCCGTCAACTGGAGTTAAATATACGGCAGGTTTTGGGGTTTGA 1602 48.5 MAAASLEAIPLRSTLLLLFIVTLCPWVNTSTRTTPFANNDNQYNISQHDHLVQWECLNVPTSNFLNSVTKTIDSLRQVISIVSQFSNLIGDFRLSSAISDCLDLLDSSVDELTRSISTIRNRKAKDNSTGNLSSDLKTWLSAALVNPETCMDGFEGTNGILKSLVSAGIGQVTSLVSDLLSMVASSYGDGQSDAASWIVESDGEERSKFMLRSMNDVGVDVTVAADGSGNFMNVMDAVLAAPDYSMRRYVIYIKKGVYRENVEIKKKKWNLIMIGDGMDHTVISGNRSFVDGWTTFRSATFAVSGRGFMARDLTIENSAGPEKHQAVALRSDSDLSVFFRCSIRGYQDTLYTHTMRQFYRECRVSGTVDFIFGDGTVVFQNCQILARNGLSNQKNTITAQGRKDPGQTTGFSFQFCNISADTVLVNSSSSNPTYLGRPWKQYSRTVVMQSYMSELIKPQGWLEWNADFALDTLFYGEYNNYGPGAGLSSRVKWPGYHVLNQSSEATNYTVAQFIQGNMWLPSTGVKYTAGFGV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6721999 6724309 - Conep04aG0092800.1 Cone4ag0895 435873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0895 533 Pfam Plant invertase/pectin methylesterase inhibitor 67 182 IPR006501 GO:0004857(InterPro)
Cone4ag0895 533 PANTHER PECTINESTERASE 59 522 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone4ag0895 533 FunFam Pectinesterase 214 531 - -
Cone4ag0895 533 Pfam Pectinesterase 220 517 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone4ag0895 533 SUPERFAMILY Pectin lyase-like 218 530 IPR011050 -
Cone4ag0895 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 183 IPR035513 -
Cone4ag0895 533 ProSitePatterns Pectinesterase signature 1. 245 264 IPR018040 -
Cone4ag0895 533 NCBIfam pectinesterase inhibitor domain 67 177 IPR006501 GO:0004857(InterPro)
Cone4ag0895 533 Gene3D - 214 531 IPR012334 -
Cone4ag0895 533 SMART PMEI_2 47 182 IPR006501 GO:0004857(InterPro)
Cone4ag0895 533 CDD PMEI-like_4 50 186 - -
Cone4ag0895 533 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Cone4ag0895 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 185 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0028 Cone-Chr12:217607 Cone4ag0895 Cone-Chr4:6721999 1.26E-103 dispersed
Cone4ag0895 Cone-Chr4:6721999 Cone5ag0055 Cone-Chr5:277864 2.68E-160 dispersed
Cone4ag0894 Cone-Chr4:6621834 Cone4ag0895 Cone-Chr4:6721999 2.91E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0895 K01051 - csv:116402691 712.605