Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag0917 ATGGCAGGTGTGGCTCCAGAAGGATCTCAATTTGATGGCCGTCAATATGATACTAAAATGAATGAGTTATTGTCATCTGATGGACAGGACTTCTTCACCTCCTATGATGAAGTTTATGACAGTTTTGATGCCATGGGTCTGCAAGAGAACCTTCTAAGAGGCATCTATGCCTATGGTTTTGAGAAACCCTCCGCAATTCAACAAAGGGGAATTGTTCCCTTTTGCAAAGGTCTCGATGTTATCCAACAGGCACAGTCTGGAACTGGGAAAACAGCAACTTTCTGCTCTGGAATCTTGGAGCAACTTGATTATGGCCTAGTACAGTGTCAAGCTTTGGTTCTTGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTCATGCGAGCACTTGGAGATTATCTTGGTGTTAAGGTACATGCTTGTGTAGGTGGGACCAGTGTGCGTGAGGATCAACGCATTCTTCAAGCTGGAGTCCATGTTGTTGTTGGCACTCCTGGCCGTGTGTTTGACATGCTTCGCAGGCAGTCACTTCGCCCAGATTACATAAAGATGTTCGTCCTCGACGAAGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCAAAGGTTCAGGTTGGAGTGTTCTCTGCTACAATGCCTCCTGAAGCGCTTGAGATCACCCGAAAATTCATGAACAAACCTGTTAGAATCCTGGTGAAGAGAGATGAGCTCACCCTAGAAGGGATCAAGCAGTTCTACGTCAATGTTGAAAAGGAAGAGTGGAAGCTCGAAACACTCTGTGATCTCTACGAGACTCTAGCTATCACGCAGAGTGTCATTTTCGTAAATACCCGCCGTAAAGTTGATTGGCTTACAGACAAGATGAAAAGCCGGGACCACACAGTGTCTGCCACTCATGGTGACATGGACCAGAACACAAGGGACATAATCATGCGTGAGTTCCGTTCCGGATCTTCCCGTGTTCTCATCACGACTGATCTGTTGGCTCGTGGAATTGATGTCCAGCAAGTCTCTCTTGTCATAAACTATGATTTGCCGACCCAACCAGAAAATTACCTTCACAGGATTGGACGTAGTGGAAGGTTTGGAAGAAAGGGAGTTGCTATCAACTTTGTGACTCAAGATGATTCCAGGATGCTGGCTGATATTCAGAGGTTCTATAATGTGGTTGTTGAGGAGCTGCCACAAAATGTTGCTGATCTCCTGTGA 1242 45.97 MAGVAPEGSQFDGRQYDTKMNELLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILEQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMKSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTQDDSRMLADIQRFYNVVVEELPQNVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7457400 7466103 + Conep04aG0095000.1 Cone4ag0917 435895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag0917 413 SMART ultradead3 59 256 IPR014001 -
Cone4ag0917 413 CDD DEADc_EIF4A 44 242 - -
Cone4ag0917 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cone4ag0917 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cone4ag0917 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Cone4ag0917 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Cone4ag0917 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Cone4ag0917 413 Gene3D - 30 248 IPR027417 -
Cone4ag0917 413 CDD SF2_C_DEAD 253 383 - -
Cone4ag0917 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone4ag0917 413 Gene3D - 249 413 IPR027417 -
Cone4ag0917 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Cone4ag0917 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Cone4ag0917 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Cone4ag0917 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Cone4ag0917 413 SMART helicmild6 293 374 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1092 Cone-Chr18:7997133 Cone4ag0917 Cone-Chr4:7457400 5.22E-87 dispersed
Cone19ag0589 Cone-Chr19:5195248 Cone4ag0917 Cone-Chr4:7457400 1.35E-60 dispersed
Cone20ag0276 Cone-Chr20:1225314 Cone4ag0917 Cone-Chr4:7457400 3.77E-205 dispersed
Cone4ag0917 Cone-Chr4:7457400 Cone4ag1789 Cone-Chr4:13021951 3.67E-75 dispersed
Cone17ag0089 Cone-Chr17:476974 Cone4ag0917 Cone-Chr4:7457400 3.61E-284 wgd
Cone20ag1318 Cone-Chr20:8545884 Cone4ag0917 Cone-Chr4:7457400 2.41E-131 wgd
Cone4ag0917 Cone-Chr4:7457400 Cone7ag1231 Cone-Chr7:9130316 1.53E-301 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag0917 K03257 - cit:102621232 801.586